Gene detail

Detail information of GWHGAAZE023451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007139669.1	4.0424E-173	hypothetical protein PHAVU_008G049000g [Phaseolus vulgaris]
COG	YP_004862459.1	2E-93	3-deoxy-7-phosphoheptulonate synthase
Swissprot	tr\|Q9AV97\|KDSA1_ARATH	8E-173	2-dehydro-3-deoxyphosphooctonate aldolase 1
trEMBL	tr\|V7B483\|V7B483_PHAVU	2E-173	Uncharacterized protein {ECO:0000313\|EMBL:ESW11663.1}
TAIR10	AT1G79500.4	2E-136	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8910069	8915131	+
GWHAAZE00000007	mRNA	8910069	8915131	+
GWHAAZE00000007	exon	8910069	8910208	+
GWHAAZE00000007	exon	8910597	8910693	+
GWHAAZE00000007	exon	8911088	8911153	+
GWHAAZE00000007	exon	8912669	8912728	+
GWHAAZE00000007	exon	8912844	8912918	+
GWHAAZE00000007	exon	8913028	8913112	+
GWHAAZE00000007	exon	8913235	8913293	+
GWHAAZE00000007	exon	8913435	8913479	+
GWHAAZE00000007	exon	8913628	8913747	+
GWHAAZE00000007	exon	8914949	8914996	+
GWHAAZE00000007	exon	8915084	8915131	+
GWHAAZE00000007	CDS	8910069	8910208	+
GWHAAZE00000007	CDS	8910597	8910693	+
GWHAAZE00000007	CDS	8911088	8911153	+
GWHAAZE00000007	CDS	8912669	8912728	+
GWHAAZE00000007	CDS	8912844	8912918	+
GWHAAZE00000007	CDS	8913028	8913112	+
GWHAAZE00000007	CDS	8913235	8913293	+
GWHAAZE00000007	CDS	8913435	8913479	+
GWHAAZE00000007	CDS	8913628	8913747	+
GWHAAZE00000007	CDS	8914949	8914996	+
GWHAAZE00000007	CDS	8915084	8915131	+

Transcript Sequence
>GWHTAAZE023481 ATGGCAGCTTACTATCCTCAATTGCTGTCAACTTTGAAACAGACAGCAAAACCTTTTTTCCTATTAGCAGGTCCCAATGTTATTGAATCAGAGGAGCATGTTCTACGTATGGCCGGGCACATCAAGGACATTTCATCAAAACTTGGGTTGCAGTTGGTTTTCAAATCGAGCTTTGACAAAGCTAATAGAACATCCTCTAAATCATTTCGGGGTCCTGGCTTAGCTGAAGGCTTGAAGATCCTTGAAAAGGTGAAAGTGGCATATGACATACCCATAGTGACTGATGTACATGAAGCTAATCAGTGCGATGCAGTTGGCAAGGTCGCCGATATAATTCAGATTCCAGCTTTTTTATGCCGACAGACAGATCTCCTAGTTGCAGCTGCCAAGACCGGAAAAATTATCAATATTAAGAAAGGGCAATTTTGTGCTCCTTCTGTCATGGTAAATTCTGCCGAGAAGGTTAGATTGGCCGGAAATCAAAATGTTATGGTTTGTGAGAGAGGAACTATGTTTGGCTATAATGATTTGATTGTTGATCCACGCAACTTTGAATGGATGAGGGAAGCAAATTGTCCAATTGTAGCGGATGTCACACACTCATTACAACAACCTGCTGGGAAAAAGTTGGAAGGTGGGGGAGTTGCCAGTGGAGGTCTTCGTGAATTGATACCTTGCATTGCGAGGACAGCTGTTGCTGTTGGAGTGGATGGAATTTTTATGGAGGTATATATTCAGAAAAATGCTGTGCATGATGATCCTCTAAATGCTCCAGTGGACGGTCCAACCCAATGGCCTCTGCGCCATTTGGAGGAACTCCTAGTAGAGCTTGTGGCAATAGCT

Network for GWHGAAZE023451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00793.21	DAHP_synth_1	17	248	3.80E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01627	kdsA	Metabolic pathways	map01100
K01627	kdsA	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0008676	molecular_function	3-deoxy-8-phosphooctulonate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.270
	SRR3591706	second leaf	5.635
	SRR3591707	mature leaf	2.451
	SRR3591708	Shoot apex	11.804
	SRR3591709	Stem	10.635
	SRR3591710	White floral bud	7.820
	SRR3591711	White flower	10.595
	SRR3591712	Green floral bud	17.493
	SRR3591713	Yellow flower	11.169
SRP173429	SRR8316895	Juvenile bud stage	24.420
	SRR8316896	Juvenile bud stage	34.253
	SRR8316897	Juvenile bud stage	17.576
	SRR8316894	Third green stage	13.395
	SRR8316900	Third green stage	43.118
	SRR8316901	Third green stage	44.620
	SRR8316898	Complete white stage	12.079
	SRR8316899	Complete white stage	36.569
	SRR8316903	Complete white stage	13.139
	SRR8316902	Silver flowering stage	6.481
	SRR8316904	Silver flowering stage	8.487
	SRR8316905	Silver flowering stage	5.046
	SRR8316906	Gold flowering stage	16.442
	SRR8316907	Gold flowering stage	18.863
	SRR8316908	Gold flowering stage	18.467
SRP132670	SRR6706286	Control	39.212
	SRR6706287	Light intensity 50%	38.484
	SRR6706288	Light intensity 20%	41.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.527
	CNS0095593	Slightly white alabastrum(diploid) 2	31.826
	CNS0095594	Slightly white alabastrum(diploid) 3	37.422
	CNS0095595	Whole white alabastrum(diploid) 2	34.501
	CNS0095596	Whole white alabastrum(diploid) 3	40.152
	CNS0095597	Whole white alabastrum(diploid) 4	36.620
	CNS0095598	Silvery flower (diploied) 1	30.205
	CNS0095599	Silvery flower (diploied) 2	24.069
	CNS0095600	Silvery flower (diploied) 3	20.444
	CNS0095601	Golden flower (diploid) 1	29.998
	CNS0095602	Golden flower (diploid) 2	21.163
	CNS0095603	Golden flower (diploid) 3	20.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.458
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.338
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.421
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.780
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.391
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.202
	CNS0095610	Silvery flower (tetraploid) 1	17.403
	CNS0095611	Silvery flower (tetraploid) 2	20.462
	CNS0095612	Silvery flower (tetraploid) 3	12.952
	CNS0095613	Golden flower (tetraploid) 1	13.350
	CNS0095614	Golden flower (tetraploid) 2	14.722
	CNS0095615	Golden flower (tetraploid) 3	7.265
CRA001975	CRR073297	Stem 1	34.288
	CRR073298	Stem 2	32.531
	CRR073299	Stem 3	26.538
	CRR073300	Leaf 1	31.570
	CRR073301	Leaf 2	37.491
	CRR073302	Leaf 3	28.311
	CRR073303	Juvenile bud 1	24.637
	CRR073304	Juvenile bud 2	23.956
	CRR073305	Juvenile bud 3	26.585
	CRR073306	Third green 1	7.554
	CRR073307	Third green 2	7.218
	CRR073308	Third green 3	7.135
	CRR073309	Second white 1	19.830
	CRR073310	Second white 2	10.976
	CRR073311	Second white 3	12.333
	CRR073312	Silver flowering 1	12.836
	CRR073313	Silver flowering 2	12.562
	CRR073314	Silver flowering 3	9.077
	CRR073315	Gold flowering 1	19.490
	CRR073316	Gold flowering 2	25.112
	CRR073317	Gold flowering 3	16.621
	CRR073318	Tawny withering 1	27.991
	CRR073319	Tawny withering 2	24.339
	CRR073320	Tawny withering 3	29.137