Gene detail

Detail information of GWHGAAZE023446

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004509081.1	0	PREDICTED: casein kinase II subunit alpha-2-like isoform X1 [Cicer arietinum]
COG	YP_004270953.1	4E-16	serine/threonine protein kinase
Swissprot	tr\|Q08467\|CSK21_ARATH	0	Casein kinase II subunit alpha-1 (Precursor)
trEMBL	tr\|G7JCT7\|G7JCT7_MEDTR	0	Casein kinase {ECO:0000313\|EMBL:AES90662.1}
TAIR10	AT5G67380.1	2E-178	casein kinase alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8808244	8812853	-
GWHAAZE00000007	mRNA	8808244	8812853	-
GWHAAZE00000007	exon	8808244	8808303	-
GWHAAZE00000007	exon	8808671	8808739	-
GWHAAZE00000007	exon	8808844	8808907	-
GWHAAZE00000007	exon	8809170	8809252	-
GWHAAZE00000007	exon	8810113	8810178	-
GWHAAZE00000007	exon	8810341	8810431	-
GWHAAZE00000007	exon	8810619	8810776	-
GWHAAZE00000007	exon	8810870	8811037	-
GWHAAZE00000007	exon	8811172	8811304	-
GWHAAZE00000007	exon	8812561	8812853	-
GWHAAZE00000007	CDS	8812561	8812853	-
GWHAAZE00000007	CDS	8811172	8811304	-
GWHAAZE00000007	CDS	8810870	8811037	-
GWHAAZE00000007	CDS	8810619	8810776	-
GWHAAZE00000007	CDS	8810341	8810431	-
GWHAAZE00000007	CDS	8810113	8810178	-
GWHAAZE00000007	CDS	8809170	8809252	-
GWHAAZE00000007	CDS	8808844	8808907	-
GWHAAZE00000007	CDS	8808671	8808739	-
GWHAAZE00000007	CDS	8808244	8808303	-

Transcript Sequence
>GWHTAAZE023476 ATGCGCACAACAAAATCCGTACTACTGCTTCTACAGCTGGTCCTTATATCGCTAGTGTGCGTTCTCGTGGTCTTGCGTGCACCGGTTGCGCAGGCCCCTAACCTTCTCCCCTCATCAATCGACGGCAACACCACCTCAATCGTCGGCGGCGATAAGATCAACAACTTCTTCTTCCCGGAGATCTACGGTTCGAGAATCGCACTGAGCATGTCAAAGTCACGAGTTTATGCCGATATCAATGTTATTCGTCCCAAAGAGTATTGGGATTACGAATCCCTTGCTGTTCAATGGGGTGAACAAGACGACTATGAGGTTGTTCGAAAAGTGGGAAGGGGGAAATACAGTGAAGTTTTCGAGGGGATAAACATCAACAGTAATGAGCGGTGCGTAATTAAGATTCTGAAACCTGTCAAGAAAAAAAAGGTAAACCTTTGCGGGGGCCCAAATATCATCAAACTCCTTGATATAGTCAGAGATCAGCACTCAAAAACCCCTAGCTTGGTATTTGAGTACGTAAATAGTACGGATTTCAAGGTTTTGTATCCAACATTGACGGATTATGACATACGTTACTACATATATGAGCTTCTCAAGGCATTAGATTACTGTCACTCACAAGGAATAATGCACAGAGATGTGAAGCCTCACAATGTTATGATAGATCATGAGTTGAGAAAACTTCGATTAATAGATTGGGGACTTGCTGAATTTTACCATCCTGGCAAAGAATATAATGTTCGTGTAGCTTCGAGGTACTTTAAGGGGCCTGAACTCCTAGTTGATTTACAAGACTATGACTATTCTTTAGATATGTGGAGCCTTGGGTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCATGATAATCAAGATCAGCTTGTCAAAATTGCAAGGGTGCTTGGAACAGAAGAATTAAATGTGTATTTGAATAAATATCGGCTAGAGCTTGATCCTCAACTTGATGCTCTTGTAGGCAGGCACAGCAGGAAGCCCTGGTCCAAATTCATTAATGCAGATAATCAGCATCTAGTATCTCCTGAGGCGGTTGATTTCCTCGACAAGCTTCTCCGTTATGATCATCAAGATAGGGTCACAGCAAAAGAAGCAATGGGACACCCTTATTTCTTGCAAGTGAGAGCTGCAGAGAGTAGCAGGATGCGGACACAGTAA

Network for GWHGAAZE023446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	103	380	6.20E-59

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CK2

KEGG pathway

KO	Enzyme	pathway	mapID
K03097	CSNK2A	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.682
	SRR3591706	second leaf	28.121
	SRR3591707	mature leaf	19.574
	SRR3591708	Shoot apex	52.601
	SRR3591709	Stem	55.729
	SRR3591710	White floral bud	52.699
	SRR3591711	White flower	39.777
	SRR3591712	Green floral bud	62.023
	SRR3591713	Yellow flower	36.302
SRP173429	SRR8316895	Juvenile bud stage	28.430
	SRR8316896	Juvenile bud stage	38.591
	SRR8316897	Juvenile bud stage	18.393
	SRR8316894	Third green stage	16.706
	SRR8316900	Third green stage	54.661
	SRR8316901	Third green stage	53.800
	SRR8316898	Complete white stage	19.315
	SRR8316899	Complete white stage	67.533
	SRR8316903	Complete white stage	27.988
	SRR8316902	Silver flowering stage	15.306
	SRR8316904	Silver flowering stage	20.215
	SRR8316905	Silver flowering stage	9.860
	SRR8316906	Gold flowering stage	37.671
	SRR8316907	Gold flowering stage	37.601
	SRR8316908	Gold flowering stage	42.409
SRP132670	SRR6706286	Control	53.903
	SRR6706287	Light intensity 50%	59.489
	SRR6706288	Light intensity 20%	58.624
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.934
	CNS0095593	Slightly white alabastrum(diploid) 2	40.654
	CNS0095594	Slightly white alabastrum(diploid) 3	38.637
	CNS0095595	Whole white alabastrum(diploid) 2	43.469
	CNS0095596	Whole white alabastrum(diploid) 3	47.662
	CNS0095597	Whole white alabastrum(diploid) 4	45.589
	CNS0095598	Silvery flower (diploied) 1	31.312
	CNS0095599	Silvery flower (diploied) 2	24.693
	CNS0095600	Silvery flower (diploied) 3	34.259
	CNS0095601	Golden flower (diploid) 1	26.424
	CNS0095602	Golden flower (diploid) 2	31.898
	CNS0095603	Golden flower (diploid) 3	31.312
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.230
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.842
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.758
	CNS0095610	Silvery flower (tetraploid) 1	33.112
	CNS0095611	Silvery flower (tetraploid) 2	26.940
	CNS0095612	Silvery flower (tetraploid) 3	24.735
	CNS0095613	Golden flower (tetraploid) 1	24.670
	CNS0095614	Golden flower (tetraploid) 2	35.998
	CNS0095615	Golden flower (tetraploid) 3	19.435
CRA001975	CRR073297	Stem 1	30.292
	CRR073298	Stem 2	30.758
	CRR073299	Stem 3	25.494
	CRR073300	Leaf 1	38.093
	CRR073301	Leaf 2	34.661
	CRR073302	Leaf 3	31.058
	CRR073303	Juvenile bud 1	38.145
	CRR073304	Juvenile bud 2	33.758
	CRR073305	Juvenile bud 3	34.162
	CRR073306	Third green 1	11.643
	CRR073307	Third green 2	12.805
	CRR073308	Third green 3	12.158
	CRR073309	Second white 1	9.720
	CRR073310	Second white 2	13.046
	CRR073311	Second white 3	12.234
	CRR073312	Silver flowering 1	9.660
	CRR073313	Silver flowering 2	6.832
	CRR073314	Silver flowering 3	7.178
	CRR073315	Gold flowering 1	10.147
	CRR073316	Gold flowering 2	11.878
	CRR073317	Gold flowering 3	8.391
	CRR073318	Tawny withering 1	22.913
	CRR073319	Tawny withering 2	24.428
	CRR073320	Tawny withering 3	23.387