Gene detail

Detail information of GWHGAAZE023440

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652748.1	0	PREDICTED: uncharacterized protein LOC100247452 isoform X2 [Vitis vinifera]
COG	YP_007065907.1	0.0000001	serine/threonine protein kinase with WD40 repeats
trEMBL	tr\|F6HSV7\|F6HSV7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57767.1}
TAIR10	AT4G34280.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8653142	8658756	-
GWHAAZE00000007	mRNA	8653142	8658756	-
GWHAAZE00000007	exon	8658725	8658756	-
GWHAAZE00000007	exon	8657206	8657272	-
GWHAAZE00000007	exon	8656846	8657099	-
GWHAAZE00000007	exon	8656107	8656572	-
GWHAAZE00000007	exon	8655196	8655807	-
GWHAAZE00000007	exon	8654349	8654789	-
GWHAAZE00000007	exon	8653704	8653898	-
GWHAAZE00000007	exon	8653535	8653591	-
GWHAAZE00000007	exon	8653310	8653372	-
GWHAAZE00000007	exon	8653142	8653222	-
GWHAAZE00000007	CDS	8658725	8658756	-
GWHAAZE00000007	CDS	8657206	8657272	-
GWHAAZE00000007	CDS	8656846	8657099	-
GWHAAZE00000007	CDS	8656107	8656572	-
GWHAAZE00000007	CDS	8655196	8655807	-
GWHAAZE00000007	CDS	8654349	8654789	-
GWHAAZE00000007	CDS	8653704	8653898	-
GWHAAZE00000007	CDS	8653535	8653591	-
GWHAAZE00000007	CDS	8653310	8653372	-
GWHAAZE00000007	CDS	8653142	8653222	-

Transcript Sequence
>GWHTAAZE023470 ATGTCACTTGAAATCTCCAGCTTAACATCCAGGTATCTGGATTCTTGCAAGAGGCATGATGTGCTACCCAATTCTGCAGTATTATCATGGTTTTATAAGGCCAATGTTAAGAAATCCATCTATCAGAAATGTTCTGTAGTGGTCTTATTGGACCAACTTAATGATGCTGATTTCTCTCCCCTGGTTGATTTCTTCCATGCAAATGACGCTTCTGAAATTGAGGCTGTTGACGTAATTCATAATTCACCCTGTGTCTTGAACCAAGATTGTGTTTTCTCTTTAATGCGTGCGATAAACTCAAAGGTCCGAGTTGTTGATCTCCAGAATATGTCACTTAAGGAGGATGACTTGAGGGATCTTTTCAAGGGTGGCTTGGATTGCCAGGTTCTAAACTTAAGGTCCACAGAGATACGAAAGCTCGACATGTTTGGGAGATTAATGAAGATACACACCCTTAATCTTGATTTTTGTACTTCAATCTCTACTCTGCAAAAGGATACATTTGCTTGCATGCCCAATCTGATGCGTCTCTCAATGTGTGGAACAAGAGTTGCTAATCTTTGGACAACTGCTGCTGCCCTGTCGAAACTTCCTTCTTTGGTGGAACTCCGGTTTCAAAATTGTTTGTGTTGCAATGACACTGGGCCATGTACTAGTCTTCATGCTTGTGAGAGAACTGGATTGGGTCATTCAAACAAGGACTTTTGCACTGAGCCACCAATTGAGAATATTGCATTTCGAGATTCTGGTGCAGACGAGGCAGTAATGAGTTTGGAATCTGATGCTGTCTTTAAAGAACGGGCCAATTCACAAATTGAGGTTTCTTTTGGCAAATTGCATGTTCAAGATAAGGGAGACTTGGCAGATACCTTCATGTCTTCGAAAAAGTATATTTCACACCATCCTTCGCCCATATGCTTTGAGAAACATTACAGAGAATATATGATCACTTCATTGCCTCGCTTAGGAGTTTTAGACAACCTGCCAATAGGGAAAACGGACCGAGAAATAGCTAAATTCGTCAACTCAAGACACTATGAGTTCCTACCGTACAAGCGCCAGCACAAAGAGAGTGTTGTACGTGTTTTGCATACGCGTGAAACAGGAACAAGTGGTATGCATAAACAAAAATCTTCTAGCCAACATGCGTACTCGAGGTCCCTTTGTGCTGCCAAACTTGGTTCTAGTGCATGGCCTCTTTTGGATCGCATATATGATATTGGGCATATTAACAAAGAAGACTGTGAGAGCATTCGTCCAAGGCAGTTTGAGTATCACCCATGTAACTCGAGTTTAATGGCTTTCGGAACTCTAGACGGGCAAGTAGTGGTTATTAACCATGAGAAAGGGAATCTTGTCAGCTATATCCCATGCTTCGAAACAGATAACAGCATTTTGGGACTTTGTTGGCTTAAAAAGTACCCATCCAAGCTCCTTGCAGGTTCCGATAATGGTTCCTTGAGGTTATACGACATAAAAAATATGCAGCCAACAGCTGCCAACAGCTACTGCACTTCGACGACTGTTACCTTTGATAACTTTGAGCAGTTGACTTCAGTTCATGTCAACTCAACAGACGAACAGATTCTTGCGAGTGGCTATTCGAAAAAAGTTGGTATCTATGATATTAGTAGTGGGAAACGCGTACAGTTGTTCACTGATATGCATCAAGAACCCATTAATGTAGCTAAGTTTGCAAACCATTCCCCCTTCCTCTTTGTTACTTCGTCATTTGATCGGTATGTCAAAATGTGGGACTTGAGGCAGAAACCAGTACGGCCTTGCTTTGCTACTTCAAGCTCGAGAGGAAACGTAATGGCTTGCTTCTCCCCGGATGACCTTTATCTTCTTGTCTCAGCCGTGGACAATGAGGTTAAGCAACTTTTGGCAGCAGACGGGAGGCTCCACACGAATTTCGAGATAGCTCCCACAGGAAGTGCCCACAATTATACACGCTCTTATTACATGAATGGAAGAGACTATATTATCAGTGGGAGTTGTGATGAACCTGTTGTTCGCATTTGTTGTGGTCAAACTGGAAGGCGACTTCGGGATATTTATTTGGAGGGTAGGGACATGAGCAGCTTAATGAATGTGCAATCTTTAAGGGGTGATCCTTTTAGACATTTTCACATGGCTGTGTTAGCTGCCCAAATACGTCCGAGCCCAAAATGGGAGATTGTGAAGGTTAATTTGCTTGCGTCGAATCACAGTGCCAAAGATTATTCAAGAGATCATTTCGGCCCTTCCTATAGTCTTGGAGGTTGA

Network for GWHGAAZE023440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.464
	SRR3591706	second leaf	13.621
	SRR3591707	mature leaf	22.964
	SRR3591708	Shoot apex	35.202
	SRR3591709	Stem	11.296
	SRR3591710	White floral bud	17.389
	SRR3591711	White flower	11.713
	SRR3591712	Green floral bud	5.026
	SRR3591713	Yellow flower	6.726
SRP173429	SRR8316895	Juvenile bud stage	12.249
	SRR8316896	Juvenile bud stage	12.141
	SRR8316897	Juvenile bud stage	6.996
	SRR8316894	Third green stage	3.423
	SRR8316900	Third green stage	7.813
	SRR8316901	Third green stage	9.524
	SRR8316898	Complete white stage	5.478
	SRR8316899	Complete white stage	23.328
	SRR8316903	Complete white stage	9.827
	SRR8316902	Silver flowering stage	2.184
	SRR8316904	Silver flowering stage	3.701
	SRR8316905	Silver flowering stage	1.200
	SRR8316906	Gold flowering stage	5.719
	SRR8316907	Gold flowering stage	3.983
	SRR8316908	Gold flowering stage	5.121
SRP132670	SRR6706286	Control	7.971
	SRR6706287	Light intensity 50%	7.257
	SRR6706288	Light intensity 20%	5.949
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.371
	CNS0095593	Slightly white alabastrum(diploid) 2	6.145
	CNS0095594	Slightly white alabastrum(diploid) 3	5.801
	CNS0095595	Whole white alabastrum(diploid) 2	3.174
	CNS0095596	Whole white alabastrum(diploid) 3	2.482
	CNS0095597	Whole white alabastrum(diploid) 4	4.294
	CNS0095598	Silvery flower (diploied) 1	24.088
	CNS0095599	Silvery flower (diploied) 2	19.680
	CNS0095600	Silvery flower (diploied) 3	12.703
	CNS0095601	Golden flower (diploid) 1	35.994
	CNS0095602	Golden flower (diploid) 2	25.423
	CNS0095603	Golden flower (diploid) 3	23.679
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.209
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.602
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.015
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.386
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.559
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.415
	CNS0095610	Silvery flower (tetraploid) 1	3.905
	CNS0095611	Silvery flower (tetraploid) 2	12.988
	CNS0095612	Silvery flower (tetraploid) 3	10.823
	CNS0095613	Golden flower (tetraploid) 1	2.274
	CNS0095614	Golden flower (tetraploid) 2	3.525
	CNS0095615	Golden flower (tetraploid) 3	4.282
CRA001975	CRR073297	Stem 1	41.538
	CRR073298	Stem 2	34.095
	CRR073299	Stem 3	31.604
	CRR073300	Leaf 1	18.935
	CRR073301	Leaf 2	17.790
	CRR073302	Leaf 3	14.153
	CRR073303	Juvenile bud 1	7.844
	CRR073304	Juvenile bud 2	10.849
	CRR073305	Juvenile bud 3	13.027
	CRR073306	Third green 1	0.886
	CRR073307	Third green 2	0.606
	CRR073308	Third green 3	1.220
	CRR073309	Second white 1	0.638
	CRR073310	Second white 2	0.194
	CRR073311	Second white 3	0.091
	CRR073312	Silver flowering 1	0.341
	CRR073313	Silver flowering 2	0.880
	CRR073314	Silver flowering 3	0.088
	CRR073315	Gold flowering 1	21.852
	CRR073316	Gold flowering 2	38.389
	CRR073317	Gold flowering 3	32.938
	CRR073318	Tawny withering 1	17.852
	CRR073319	Tawny withering 2	25.059
	CRR073320	Tawny withering 3	19.501