Gene detail

Detail information of GWHGAAZE023435

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042570.1	0	Auxin-responsive GH3 family protein [Theobroma cacao]
COG	YP_007377314.1	3E-13	putative auxin-regulated protein
Swissprot	tr\|O82333\|GH31_ARATH	0	Probable indole-3-acetic acid-amido synthetase GH3.1
trEMBL	tr\|A0A061E230\|A0A061E230_THECC	0	Auxin-responsive GH3 family protein {ECO:0000313\|EMBL:EOX98401.1}
TAIR10	AT2G14960.1	0	Auxin-responsive GH3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8522369	8524853	+
GWHAAZE00000007	mRNA	8522369	8524853	+
GWHAAZE00000007	exon	8522369	8522688	+
GWHAAZE00000007	exon	8522812	8522913	+
GWHAAZE00000007	exon	8523476	8524853	+
GWHAAZE00000007	CDS	8522369	8522688	+
GWHAAZE00000007	CDS	8522812	8522913	+
GWHAAZE00000007	CDS	8523476	8524853	+

Transcript Sequence
>GWHTAAZE023465 ATGGCCATTGACTCGAGCCTTTCGTCTCCACTTGGTCCTCCGGCCAACGAGAAGGATGCAAAGGCGCTCGAGTTCATCGAAGAGATGACTAGAAATGCAGACCCGGTGCAAGAGAAGGTTTTGGGTGAAATACTTAGCCGAAATGGCAAGACTGAGTATTTACAGAGGTTTCAACTAAAGGGAGCGACGGACCGTGATACTTTTAAGTCGAAAGTACCAGTTGTGACTTACGAGGATCTCCAGCCGGAGATCACGAGGATTGCTAATGGCGACCGCTCTCCAATCCTCTCTTCTCATCCCATCTCCGAGTTTCTCACTAGTTCGGGAACATCTGCTGGAGAAAGAAAGCTGATGCCAACAATTGAGGAAGAGTTGGACCGCAGACAAAAACTCTACAGCCTTCTCATGCCTGTCATGAACCTGTATGTGCCGGGCTTAGACAAGGGCAAGGGCTTGTACTTCCTATTCGTGAAGGCTGAGACCAAGACCCCAGGTGGGTTAGTGGCCCGCCCAGTCTTAACCAGCTACTACAAAAGCCAACACTTCAAAACCAGACCCTACGACCCATTTAACGTTTACACAAGCCCAAATGAAGCCATTCTCTGCCCAGACTCTTTCCAAAGCATGTACACTCAAATGCTATGTGGCCTCCTCATGCGCCACCAAGTCCTCCGCGTTGGCGCTGTCTTCGCCTCCGGCCTCCTCCGTGCCATCCGCTTCCTCCAGCTCAATTGGCCTCAACTCGCCCTTGATATCTCCACAGGCACTCTTAACCCCAAAATCACTGATCCCTCCTTAATCAAATGCATGTCCACTATCCTCAAACCTAACCTGGAGCTAGCCCAATTCATCATTGGGGAATGCTCGGGCGAGAGTTGGGAGGGGATTATTAAGAGAATTTGGCCTAATACAAAATATTTGGATGTAATTGTTACCGGGGCTATGGCTCAGTATATTCCAACACTGGATTATTTCAGCAATAAGTTGCCTAAAACTTGTACCATGTACGCGTCTTCGGAATGTTATTTTGGGCTTAATTTGAAGCCTATGTGTGACCCATCTGAAGTTTCTTACACAATTATGCCAAACATGGCCTACTTCGAGTTCCTACCCCATGACCCGGTCAACTCAATGAGTTTGACTCGTGAATCACCTCCCCGATTGGTTGACCTGGCTGACGTGGAGGTGGGGAAGGAGTATGAGCTAGTTATTACTACTTATGCAGGATTGTGTAGGTATAGAGTCGGAGATATTCTACTAGTGACTGGGTACCACAACTCAGCCCCACAATTTAAGTTTGTTAGGAGGAAGAATGTTTTGTTAAGTATTGACGCGGATAAAACTGACGAGTTAGAGTTGCAAAAGGCGATCGATAATGCTTCGGTTTTGTTGCAAGAGTTTAATACTAGCATTGTGGAATACACTAGTTACGGAGACACCAAGACTCTCCCGGGGCATTATGTGATTTATTGGGAGTTGTTGGTGAAGGACTTGGCTAACTCACCGAGTCACGAAGTTTTGGATCGATGTTGTTTGGCAATGGAGGAGTCGTTGAACTCGGTGTACCGACAAGGCCGAGTCGCTGATAACTCGATCGGACCTCTTGAAATTAGGGTTGTGAAAAACGGAACATTTGAGGAGCTTATGGACTACGCAATTTCGAGGGGTGCGTCAATTAACCAGTATAAGGTTCCCAGGTGTGTCAGTTTTACGCCCATTATGGAACTCCTCGACTCAAGGGTGATGTCAACACATTTTAGTCCAGCTACGCCACACTGGACCCCAGATCGACGTCGTTGA

Network for GWHGAAZE023435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03321.14	GH3	26	569	1.90E-197

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14487	GH3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.061
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.889
	SRR3591709	Stem	0.445
	SRR3591710	White floral bud	0.207
	SRR3591711	White flower	1.908
	SRR3591712	Green floral bud	0.180
	SRR3591713	Yellow flower	1.723
SRP173429	SRR8316895	Juvenile bud stage	0.424
	SRR8316896	Juvenile bud stage	1.180
	SRR8316897	Juvenile bud stage	0.422
	SRR8316894	Third green stage	0.677
	SRR8316900	Third green stage	0.190
	SRR8316901	Third green stage	0.250
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.319
	SRR8316903	Complete white stage	0.066
	SRR8316902	Silver flowering stage	0.474
	SRR8316904	Silver flowering stage	0.263
	SRR8316905	Silver flowering stage	0.038
	SRR8316906	Gold flowering stage	0.149
	SRR8316907	Gold flowering stage	0.282
	SRR8316908	Gold flowering stage	0.299
SRP132670	SRR6706286	Control	1.165
	SRR6706287	Light intensity 50%	1.174
	SRR6706288	Light intensity 20%	0.693
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.241
	CNS0095593	Slightly white alabastrum(diploid) 2	0.401
	CNS0095594	Slightly white alabastrum(diploid) 3	1.016
	CNS0095595	Whole white alabastrum(diploid) 2	1.008
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.212
	CNS0095598	Silvery flower (diploied) 1	0.360
	CNS0095599	Silvery flower (diploied) 2	0.059
	CNS0095600	Silvery flower (diploied) 3	0.206
	CNS0095601	Golden flower (diploid) 1	0.050
	CNS0095602	Golden flower (diploid) 2	0.174
	CNS0095603	Golden flower (diploid) 3	0.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.339
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.142
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.598
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.355
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.082
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.051
	CNS0095610	Silvery flower (tetraploid) 1	1.638
	CNS0095611	Silvery flower (tetraploid) 2	0.542
	CNS0095612	Silvery flower (tetraploid) 3	0.357
	CNS0095613	Golden flower (tetraploid) 1	1.077
	CNS0095614	Golden flower (tetraploid) 2	1.993
	CNS0095615	Golden flower (tetraploid) 3	0.867
CRA001975	CRR073297	Stem 1	1.079
	CRR073298	Stem 2	3.727
	CRR073299	Stem 3	3.156
	CRR073300	Leaf 1	0.918
	CRR073301	Leaf 2	1.129
	CRR073302	Leaf 3	0.641
	CRR073303	Juvenile bud 1	0.212
	CRR073304	Juvenile bud 2	0.389
	CRR073305	Juvenile bud 3	2.345
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.158
	CRR073308	Third green 3	0.524
	CRR073309	Second white 1	0.245
	CRR073310	Second white 2	0.046
	CRR073311	Second white 3	1.139
	CRR073312	Silver flowering 1	0.157
	CRR073313	Silver flowering 2	0.231
	CRR073314	Silver flowering 3	0.743
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.047
	CRR073318	Tawny withering 1	0.247
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.086