Gene detail

Detail information of GWHGAAZE023429

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02533.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SK28\|FH18_ARATH	0.00000004	Formin-like protein 18
trEMBL	tr\|A0A068U4J1\|A0A068U4J1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02533.1}
TAIR10	AT3G19420.1	0	PTEN 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	8290692	8297848	+
GWHAAZE00000007	mRNA	8290692	8297848	+
GWHAAZE00000007	exon	8290692	8290961	+
GWHAAZE00000007	exon	8293675	8293776	+
GWHAAZE00000007	exon	8293860	8293916	+
GWHAAZE00000007	exon	8295067	8295243	+
GWHAAZE00000007	exon	8295348	8295434	+
GWHAAZE00000007	exon	8295530	8295594	+
GWHAAZE00000007	exon	8295674	8295750	+
GWHAAZE00000007	exon	8295835	8295917	+
GWHAAZE00000007	exon	8296010	8296140	+
GWHAAZE00000007	exon	8296798	8296867	+
GWHAAZE00000007	exon	8297342	8297848	+
GWHAAZE00000007	CDS	8290692	8290961	+
GWHAAZE00000007	CDS	8293675	8293776	+
GWHAAZE00000007	CDS	8293860	8293916	+
GWHAAZE00000007	CDS	8295067	8295243	+
GWHAAZE00000007	CDS	8295348	8295434	+
GWHAAZE00000007	CDS	8295530	8295594	+
GWHAAZE00000007	CDS	8295674	8295750	+
GWHAAZE00000007	CDS	8295835	8295917	+
GWHAAZE00000007	CDS	8296010	8296140	+
GWHAAZE00000007	CDS	8296798	8296867	+
GWHAAZE00000007	CDS	8297342	8297848	+

Transcript Sequence
>GWHTAAZE023459 ATGGACTCGCAATCTGCTGACTCGTCATCTCAACGCATTGCTAATGTAACATTTCCCCAACCAACGGTGCCTATTCCAGAAGATCAACGGACTGGAAATGCTGGGAGCTCGGCCTTTGCCCGGCTTGCCAGTGGTTTTGGATTGGGTCCAAAAGCTTTGGAATCAAATGAGAGTGCTGGAGAAACCTCAGCAGCTGCTCAATCAAGTGTGCTTGAGTCCTTCACAAAAGGTTTAGTTGACACATCAATGAGCGCGATGAAGGCAGTGCAGGAGGGAGGATTTGATTTGGATATGACTTATATAACTGAGAATATAATTGCTATGGGGTTCCCTGCTGGTGATCTAAGCTCGGGTTTTTTTGGATTTGTTGAGGGGTTCTATCGAAATCACATGGAAGAAGTGATCAAGTTTTTCGAAACTCATCATAAGGTTGCATCTTTCCCGTTTGATGATCATAATTGTCCCCCTATTCACCTTATACTATTGTTTTGTCAAAGTGCTTATGCATGGTTAAAGGAAGATATTGTGAATGTAGTAGTTGTTCATTGTAAGGCTGGTAAGGCGAGGACAGGGTTAATGATTTGCAGCCTTCTTCTGTTCTTAAAGTTTTTCCCTACAGCTGAGGAGTGCATTGAGTATTATAACCAGAAAAGATGCGTAGACGCAAAGGGTCTAATTCTCCCAAGCCAGCTTAGGTATGTAAAATACTTCGAACGCATCTTAACAAACTACAATGGTGAAAATCCGCCAGGACGTAGGTGCATGTTAAGGGGATTTCGTCTCCACAAGTGCCCTTATTGGATTAGGCCTTCCATTACGATATCTAATCATAGCGATGAGGGTTTATATATTAAGATGTTCATCCAAACAGGAATTTTGTTTTCGACCAGGAAGCATCCAAAAACCAAGGATCTAATGCCCGAAGATTTCTGGATTCGGGCGCCAAGGAAAGGGATTGTAGTTTTTGCTCTACCAGGGGAACCAGGTTTGACAGAGTTGGTGGGGGACTTCAAAATCCAGTTTCATGAACGGCAAGGAGATTTCTACTGTTGGTTAAATACAACAATGATGGAAAACAGGGTACTTCTAAATCCCTCTGATCTTGATGGTTTTGATAAGAGGAAATTGCCCTCACCAGGCTTCCAGGTCGAGATTGTCATGATAGACCATGATGGTACCACTCCAACAAAATACAAACCTAATCAAGCAAACGAGGGATCAGACAGAAGATCAGGCGAGACCCCAACTAATCATGGGGATGCCGCCACTCATTCCAACAAAAGTAAGGCCCCAGAAAACCAAGATAACGACAATGTATTCTCCGACAGCGATGGAGAGGAAACATTGTCTTCAAGAAGAAATACAACTTCAGAACCTGGAATCGGTGCACCTCCTCAATCTGGCACCACGCCAGATCAAATCTCGAATTTGAGACAAGGGACCGAACAACTTTCTATTGCGAGCAAAAATAACACACAGATCAATGCATCAAATGAAAAGAAAAGTGACGGGGATGATGAGAGACCTGCCTCGATTCCTAACTTGGACTCGGGTGATATTAAGGCAATTGCAGCTGATGCTTCTGTTTTCTCTTTCGGAGATGACGAAGATTATGAAAGTGATTGA

Network for GWHGAAZE023429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01110	PTEN	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		FoxO signaling pathway	map04068
		Phosphatidylinositol signaling system	map04070
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Focal adhesion	map04510
		Axon regeneration	map04361
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.727
	SRR3591706	second leaf	6.423
	SRR3591707	mature leaf	4.612
	SRR3591708	Shoot apex	11.977
	SRR3591709	Stem	7.371
	SRR3591710	White floral bud	6.799
	SRR3591711	White flower	4.750
	SRR3591712	Green floral bud	10.090
	SRR3591713	Yellow flower	5.885
SRP173429	SRR8316895	Juvenile bud stage	5.141
	SRR8316896	Juvenile bud stage	8.014
	SRR8316897	Juvenile bud stage	6.824
	SRR8316894	Third green stage	3.265
	SRR8316900	Third green stage	10.166
	SRR8316901	Third green stage	9.457
	SRR8316898	Complete white stage	1.854
	SRR8316899	Complete white stage	7.184
	SRR8316903	Complete white stage	2.863
	SRR8316902	Silver flowering stage	1.478
	SRR8316904	Silver flowering stage	1.867
	SRR8316905	Silver flowering stage	0.974
	SRR8316906	Gold flowering stage	3.335
	SRR8316907	Gold flowering stage	3.635
	SRR8316908	Gold flowering stage	3.824
SRP132670	SRR6706286	Control	9.671
	SRR6706287	Light intensity 50%	8.462
	SRR6706288	Light intensity 20%	9.653
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.535
	CNS0095593	Slightly white alabastrum(diploid) 2	5.910
	CNS0095594	Slightly white alabastrum(diploid) 3	6.594
	CNS0095595	Whole white alabastrum(diploid) 2	6.766
	CNS0095596	Whole white alabastrum(diploid) 3	7.405
	CNS0095597	Whole white alabastrum(diploid) 4	6.328
	CNS0095598	Silvery flower (diploied) 1	4.790
	CNS0095599	Silvery flower (diploied) 2	4.785
	CNS0095600	Silvery flower (diploied) 3	3.370
	CNS0095601	Golden flower (diploid) 1	3.553
	CNS0095602	Golden flower (diploid) 2	4.294
	CNS0095603	Golden flower (diploid) 3	3.843
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.763
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.903
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.315
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.292
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.317
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.644
	CNS0095610	Silvery flower (tetraploid) 1	6.815
	CNS0095611	Silvery flower (tetraploid) 2	7.960
	CNS0095612	Silvery flower (tetraploid) 3	7.040
	CNS0095613	Golden flower (tetraploid) 1	4.212
	CNS0095614	Golden flower (tetraploid) 2	6.095
	CNS0095615	Golden flower (tetraploid) 3	5.008
CRA001975	CRR073297	Stem 1	8.231
	CRR073298	Stem 2	6.932
	CRR073299	Stem 3	4.670
	CRR073300	Leaf 1	10.260
	CRR073301	Leaf 2	9.399
	CRR073302	Leaf 3	4.017
	CRR073303	Juvenile bud 1	4.474
	CRR073304	Juvenile bud 2	4.350
	CRR073305	Juvenile bud 3	5.471
	CRR073306	Third green 1	1.490
	CRR073307	Third green 2	1.484
	CRR073308	Third green 3	1.216
	CRR073309	Second white 1	1.391
	CRR073310	Second white 2	1.412
	CRR073311	Second white 3	1.058
	CRR073312	Silver flowering 1	2.062
	CRR073313	Silver flowering 2	1.360
	CRR073314	Silver flowering 3	0.593
	CRR073315	Gold flowering 1	1.157
	CRR073316	Gold flowering 2	1.479
	CRR073317	Gold flowering 3	1.008
	CRR073318	Tawny withering 1	4.445
	CRR073319	Tawny withering 2	4.079
	CRR073320	Tawny withering 3	4.341