Gene detail

Detail information of GWHGAAZE023422

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099316.1	1.87089E-98	PREDICTED: probable receptor-like protein kinase At5g24010 [Sesamum indicum]
Swissprot	tr\|O22187\|Y2232_ARATH	1E-75	Probable receptor-like protein kinase At2g23200 (Precursor)
trEMBL	tr\|A0A068U7W3\|A0A068U7W3_COFCA	5E-96	Coffea canephora DH200=94 genomic scaffold, scaffold_13 {ECO:0000313\|EMBL:CDP04650.1}
TAIR10	AT2G23200.1	2E-65	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7980313	7982742	-
GWHAAZE00000007	mRNA	7980313	7982742	-
GWHAAZE00000007	exon	7980313	7980776	-
GWHAAZE00000007	exon	7981044	7981522	-
GWHAAZE00000007	exon	7981604	7982100	-
GWHAAZE00000007	exon	7982455	7982742	-
GWHAAZE00000007	CDS	7982455	7982742	-
GWHAAZE00000007	CDS	7981604	7982100	-
GWHAAZE00000007	CDS	7981044	7981522	-
GWHAAZE00000007	CDS	7980313	7980776	-

Transcript Sequence
>GWHTAAZE023452 ATGGAAAACCCTTACCCCCACACCATAATTTTCTCTCTCTACCTCCTCTTCCACTTCTCTTCACCTTACACTTTACCCGACCACTACTTCATCAACTGTGGCTCCTCCTCCACCGCCACCATCAACGGCCGGAACTTCACCGGCGACACCAACTCACATCTCCTCTCCACCGCCAGCGAAACCACTATTAACCCATCAACGGTCAATCCACCTCTCTATCAAACTGCTAGAATTTTCAAAAACCCTTCTTTTTACAGCCTTCAAATCCGCGAAAATGGTATTTACGTGGGTGCTGCACGAAACAGTCCATTTTATGAAAGTGTACCTAACTACCTAGAAGGAGGGGCAGATGAATTCACAGCCCCTAATATTGTGTACCAAACAGCCAAGCAATTGAATAGAGAGAGTGATAGTAAGGAAAATACTCTCTTCAACATGACTTGGCGATTCAATGTGACGAAAAACGCTTCTCATTTTGTTCGGGCGCATTTTTGTGATATTGTTAATGTGGGGCAGAGTTATGGCAAGTTCAATTTCTTTGTTGATGAAATCTTTGCTGGGGTGATTAGTCCGGTATCTGTTTATCCCCAATTTGCAACTCCTTTTTACACGGATGTCACTGGTGAATCTGATGATTCGGGATTTATGAGTATTAGTATTGGCTCTCGTAGTGATAGTGATTCACAGGATATAATACCGTTTATAAACGGGCTTGAGATTATGGAGATAATGAAGGATTTGCCCTCGTTTGTTCCAAGAGAATCGATGAAGAAAAAGAATACAGTGAGAGCTAAGCCTGTTGATAGTTTTGATCGGCCATTAGCGCTTTTACATGGAGGAAGTTCATATGCTACTGTTAGTTCAAGAAATGTTAATGCCTCTCCGGGTACTCTAAATCTTGGGTTGAAACTAAATTTTGATGAAATTTTATATGCAACAAATAGTTTCGATCCAAAGTTGATGATTGGCGAGGGCGGGTTTGGGAAAGTGTACAAAGGGACCCTTCGAATTGGAACAAAAGTGGCTGTGAAACGGAGTGAACCAGGGCATGGACAAGGCCTATCCGAGTTCAACACAGAAATAATGGTTTTGTCGAAGATTCGCTATATCCATCTCGTTTCTTTAATCGGGTACTGTGATGAAAGATCAGAGATGATATTGGTTTACGAGTTTATGGAGAAAGGGACATTAAGAGAGCATTTGTATAGCTCTAATAATCAAGAATCCAAATTGTCTTGGAGCAAAAGGCTTGAAATTTGTATAGTGCTATGCGCTAGGCCAGCTATTAACATCTGGCTCCCTCGTGAAGAAGTGAATTTGGCTGATTGGGGGATTTCTCGGCAAAAGATAGGGGAACTCGAGAAGATCATTGATCCTTTTCTTGTGGGTAAGATTAATCCGAATTCTTTGAGGAAATTCGGGGAGACGGTGGAGAAGTGTTTGAGGGAATCCGGTGTTGAGAGGCCTAGTATGGTTGATGTAATGTGGGATTTGGAGTATGCATTTCTACTTCAACAAACACATGTGGTGAGAGAGCCACATGAGGATAGTACTACCACTACAAATGAATATTCTTGGGGTCAATTTGCATTGCCTCATGGAATTAATCCTTTGGATTCTCAAAGCATCGCAATTGAAGAAGATTATTTAATAAGTGAGGTTTCAGGTTCAAGTTTTGGAAATGCAAGTGGAGTGTTTTCACAGTTGAAGGTTGATGATGCAAGATGA

Network for GWHGAAZE023422

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11721.9	Malectin	29	95	1.20E-05
PF12819.8	Malectin_like	117	242	1.10E-11
PF07714.18	PK_Tyr_Ser-Thr	321	423	6.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.193
	SRR3591706	second leaf	5.714
	SRR3591707	mature leaf	8.133
	SRR3591708	Shoot apex	1.803
	SRR3591709	Stem	3.175
	SRR3591710	White floral bud	1.479
	SRR3591711	White flower	2.012
	SRR3591712	Green floral bud	1.013
	SRR3591713	Yellow flower	0.349
SRP173429	SRR8316895	Juvenile bud stage	1.528
	SRR8316896	Juvenile bud stage	1.787
	SRR8316897	Juvenile bud stage	0.650
	SRR8316894	Third green stage	1.020
	SRR8316900	Third green stage	1.139
	SRR8316901	Third green stage	1.113
	SRR8316898	Complete white stage	0.215
	SRR8316899	Complete white stage	2.090
	SRR8316903	Complete white stage	0.594
	SRR8316902	Silver flowering stage	0.458
	SRR8316904	Silver flowering stage	0.527
	SRR8316905	Silver flowering stage	0.201
	SRR8316906	Gold flowering stage	0.767
	SRR8316907	Gold flowering stage	0.193
	SRR8316908	Gold flowering stage	1.143
SRP132670	SRR6706286	Control	2.394
	SRR6706287	Light intensity 50%	1.730
	SRR6706288	Light intensity 20%	1.113
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.902
	CNS0095593	Slightly white alabastrum(diploid) 2	1.033
	CNS0095594	Slightly white alabastrum(diploid) 3	1.705
	CNS0095595	Whole white alabastrum(diploid) 2	1.343
	CNS0095596	Whole white alabastrum(diploid) 3	0.503
	CNS0095597	Whole white alabastrum(diploid) 4	0.789
	CNS0095598	Silvery flower (diploied) 1	2.666
	CNS0095599	Silvery flower (diploied) 2	1.267
	CNS0095600	Silvery flower (diploied) 3	0.851
	CNS0095601	Golden flower (diploid) 1	2.809
	CNS0095602	Golden flower (diploid) 2	2.559
	CNS0095603	Golden flower (diploid) 3	1.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.990
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.741
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.626
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.576
	CNS0095610	Silvery flower (tetraploid) 1	1.223
	CNS0095611	Silvery flower (tetraploid) 2	1.429
	CNS0095612	Silvery flower (tetraploid) 3	0.749
	CNS0095613	Golden flower (tetraploid) 1	0.556
	CNS0095614	Golden flower (tetraploid) 2	1.366
	CNS0095615	Golden flower (tetraploid) 3	0.329
CRA001975	CRR073297	Stem 1	2.566
	CRR073298	Stem 2	2.087
	CRR073299	Stem 3	1.891
	CRR073300	Leaf 1	1.271
	CRR073301	Leaf 2	1.255
	CRR073302	Leaf 3	1.214
	CRR073303	Juvenile bud 1	1.093
	CRR073304	Juvenile bud 2	0.313
	CRR073305	Juvenile bud 3	1.629
	CRR073306	Third green 1	0.154
	CRR073307	Third green 2	0.155
	CRR073308	Third green 3	0.237
	CRR073309	Second white 1	0.079
	CRR073310	Second white 2	0.229
	CRR073311	Second white 3	0.140
	CRR073312	Silver flowering 1	0.104
	CRR073313	Silver flowering 2	0.093
	CRR073314	Silver flowering 3	0.013
	CRR073315	Gold flowering 1	5.300
	CRR073316	Gold flowering 2	8.608
	CRR073317	Gold flowering 3	7.169
	CRR073318	Tawny withering 1	3.890
	CRR073319	Tawny withering 2	4.019
	CRR073320	Tawny withering 3	2.421