Gene detail

Detail information of GWHGAAZE023413

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099092.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Sesamum indicum]
COG	YP_004775215.1	8E-21	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGS3\|Y4372_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (Precursor)
trEMBL	tr\|A0A068U302\|A0A068U302_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02539.1}
TAIR10	AT4G37250.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7678863	7683175	-
GWHAAZE00000007	mRNA	7678863	7683175	-
GWHAAZE00000007	exon	7678863	7679545	-
GWHAAZE00000007	exon	7680960	7681352	-
GWHAAZE00000007	exon	7681942	7683175	-
GWHAAZE00000007	CDS	7681942	7683175	-
GWHAAZE00000007	CDS	7680960	7681352	-
GWHAAZE00000007	CDS	7678863	7679545	-

Transcript Sequence
>GWHTAAZE023443 ATGACCTATTCAACCTTCATGCATCTCCATTTATGTTGCAAAATTCTTGCATTTCTTCTTGTTGTTGTAAACCCCTCAATTGCCCTCAACAGAGAAGCCATTTTACTCCTCAACTTCAAATCCTCTGTTCTAAGTGACCCTCTTGGTGTTCTACAAACCTGGAATTACAACGATCAAAACCCATGTTCATGGACCGGAGTTACTTGTAGCACCTCCGGTAGCCGGACCGGTGAATATTACTACATTACCGCCTTATCTCTCCCAAATTCTCAGCTTCTTGGCTCAATCCCACCAGATCTTGGTATGATCAGATACCTTCAAGTCCTCAATCTATCCAACAATTCAATTAATGGGTCGATCCCTTTCTCTCTTTACAACAATACCCAACTTCGCATTCTTGATTTCTCCAACAATTTGATCTCCGGCGAGTTGCCGGAGTTTATCGCCGGACTAACGAATCTTCAGTATCTGAATCTCTCCGACAACGCATTGGCCGGAGAAATCCCCGAAAACATCACTAGTCTTAAGAATCTGAGAGTTATTTCTTTGAGAAACAATTATTTTGGTGGTAATCTTCATAGTGGATTTGATTCAGTTGTCTCTTTAGATCTTTCTTCCAATTTGATCAATGGGTCTTTACCCCCCAACTTTGGTGGCAATGATCTTCATTACTTGAATATATCATACAACAGATTTTCCGGTGAAATCCCAGTTCAGTTCACAAATAAAATCCCGGTGAACGCCACAATAGATCTCTCGTTCAACAATTTCAGTGGCGAAATCCCGGAAACTAGCCTGTTTCGTAACCAAGAAAATAAATCATTTTCCGGGAATCCCGAATTATGCGGTAAAGTACTGAAAAATCCTTGCCCAATTCCTTCTACAGTTTCAATTTTCCCGAATGTATCTTCACCCACATCTACTCCGGCAATTGCAGCAATACCCAAAATAGATTCAAATTCACCAACAAATTCGCCCAATGGGTCTGGCCGGAACAGCCTTAAAGCCTCCACAATCGCCGGAATAGTAGCCGGAGACATCGCCGGAGTCGGGATCCTCGCCCTAATCTTCATCTTCGTCTACCAGTTGAAGAAAAAAAGGAAATTCAATACTTCAACAAATGGCAAACATCAAGAATTCGACTGGTCATCATCTTCACAAGAAGAACAATCATGGATGAAATCATGGGCGTGTTTGTTAAAACGGCGAAACGACGAAACGTCGTCGTCGGAAGGTACGACCTCTGAAAGCGACCAAGAAGAAGCGAAAACGAGTCGGGTTAATGAAACTAAGCAAGAACATACGGATACAGGTTCGTTGGTTACTGTTGACGGGGAGAGAGAGCTTGAGCTCGAGACGTTGTTAAAGGCATCGGCATATATATTGGGGGCCACGGGTTCAAGTATAATGTATAAGGCTGTGCTCGAAGATGGGACTACGTTGGCCGTGCGGCGGATTGGAGAGTCGGGTGTGGAGCGGTTCAGGGATTTTCAGAACCAGGTTCGAGTCATTGCGAAATTGGTGCACCCGAATCTGGTGAGGATACGTGGCTTCTATTGGGGGGCTGATGAGAAGCTTGTTATTTACGATTATGTGCCCAATGGTAGCCTAGTCAATGCACGTTACAGGAAAGTGGGATCCTCACCTTGTCCTTTACCATGGGAGGTCCGACTCAAGATAGCAAGAGGTGTGGCACAAGGGCTAACCTACATCCACGAGAAGAAACATGTTCACGGAAATTTAAAGCCTAGTAATATCTTGCTAGACCAAGATATGGAGCCCAAAATCGGGGATTTTGGGCTCGAGAGGCTCGTGGCCGGCGAAAATAGTTCTAAAGCAGGTGGGTCGGCCCGGAACTTCGGTAGTAAGCGGTCCACGGCTTCTAGAGAAAGCTTCCAGGACGTGTCCAATGGGCTCACACCGAACCCGAGCCCAAGCCCGAGTTCGATGGGTTGTGTGTCTCCTTATTATGCACCTGAGTCACTCAGGAGCCTCAAGCCCAATCAGAAGTGGGACGTGTACTCGTTTGGTGTAATTTTGCTCGAGCTGCTTACCGGGAAGGTAGTTGTGTTGGATGAGGCGGGCCTCGAGCCTGCCATGCTGGCAGCCGATGAGAAGGGGAGGGTGATGAGGATGGTTGACATGGCGATTCGAGCTGACGTGGAGGGGAAGGAGGATGCCTTGCTGGCATTGTTGAAACTAGGGTTTAGTTGTATATCTACGGTCCCACACAAGAGACCAACAATGAAAGAGGCACATCAATTGCTAGAGAAATTCCCATCTTGTTCAACATCATTTTATTTTGGGTAG

Network for GWHGAAZE023413

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	30	70	1.50E-12
PF13855.7	LRR_8	105	164	1.90E-08
PF00069.26	Pkinase	462	754	4.10E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.174
	SRR3591706	second leaf	5.030
	SRR3591707	mature leaf	2.125
	SRR3591708	Shoot apex	11.878
	SRR3591709	Stem	11.976
	SRR3591710	White floral bud	12.745
	SRR3591711	White flower	15.276
	SRR3591712	Green floral bud	21.024
	SRR3591713	Yellow flower	3.883
SRP173429	SRR8316895	Juvenile bud stage	7.382
	SRR8316896	Juvenile bud stage	9.893
	SRR8316897	Juvenile bud stage	3.645
	SRR8316894	Third green stage	6.369
	SRR8316900	Third green stage	13.941
	SRR8316901	Third green stage	12.189
	SRR8316898	Complete white stage	1.743
	SRR8316899	Complete white stage	10.861
	SRR8316903	Complete white stage	3.770
	SRR8316902	Silver flowering stage	0.986
	SRR8316904	Silver flowering stage	2.121
	SRR8316905	Silver flowering stage	0.790
	SRR8316906	Gold flowering stage	1.906
	SRR8316907	Gold flowering stage	2.371
	SRR8316908	Gold flowering stage	1.721
SRP132670	SRR6706286	Control	15.053
	SRR6706287	Light intensity 50%	15.726
	SRR6706288	Light intensity 20%	15.566
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.766
	CNS0095593	Slightly white alabastrum(diploid) 2	9.384
	CNS0095594	Slightly white alabastrum(diploid) 3	5.875
	CNS0095595	Whole white alabastrum(diploid) 2	8.731
	CNS0095596	Whole white alabastrum(diploid) 3	8.782
	CNS0095597	Whole white alabastrum(diploid) 4	5.948
	CNS0095598	Silvery flower (diploied) 1	20.465
	CNS0095599	Silvery flower (diploied) 2	15.822
	CNS0095600	Silvery flower (diploied) 3	6.480
	CNS0095601	Golden flower (diploid) 1	13.380
	CNS0095602	Golden flower (diploid) 2	9.485
	CNS0095603	Golden flower (diploid) 3	10.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.991
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.332
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.479
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.986
	CNS0095610	Silvery flower (tetraploid) 1	5.059
	CNS0095611	Silvery flower (tetraploid) 2	6.651
	CNS0095612	Silvery flower (tetraploid) 3	3.763
	CNS0095613	Golden flower (tetraploid) 1	2.386
	CNS0095614	Golden flower (tetraploid) 2	2.911
	CNS0095615	Golden flower (tetraploid) 3	3.980
CRA001975	CRR073297	Stem 1	26.155
	CRR073298	Stem 2	26.039
	CRR073299	Stem 3	23.572
	CRR073300	Leaf 1	27.520
	CRR073301	Leaf 2	27.546
	CRR073302	Leaf 3	24.578
	CRR073303	Juvenile bud 1	17.676
	CRR073304	Juvenile bud 2	9.719
	CRR073305	Juvenile bud 3	18.906
	CRR073306	Third green 1	1.412
	CRR073307	Third green 2	1.549
	CRR073308	Third green 3	3.313
	CRR073309	Second white 1	0.297
	CRR073310	Second white 2	0.673
	CRR073311	Second white 3	0.581
	CRR073312	Silver flowering 1	0.077
	CRR073313	Silver flowering 2	0.327
	CRR073314	Silver flowering 3	0.369
	CRR073315	Gold flowering 1	1.405
	CRR073316	Gold flowering 2	2.251
	CRR073317	Gold flowering 3	2.877
	CRR073318	Tawny withering 1	17.671
	CRR073319	Tawny withering 2	7.303
	CRR073320	Tawny withering 3	18.902