Gene detail

Detail information of GWHGAAZE023408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02533.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068U4J1\|A0A068U4J1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02533.1}
TAIR10	AT3G19420.1	1E-152	PTEN 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7610906	7617814	+
GWHAAZE00000007	mRNA	7610906	7617814	+
GWHAAZE00000007	exon	7610906	7611175	+
GWHAAZE00000007	exon	7613880	7613981	+
GWHAAZE00000007	exon	7614065	7614121	+
GWHAAZE00000007	exon	7615047	7615223	+
GWHAAZE00000007	exon	7615329	7615415	+
GWHAAZE00000007	exon	7615511	7615575	+
GWHAAZE00000007	exon	7615655	7615731	+
GWHAAZE00000007	exon	7615991	7616051	+
GWHAAZE00000007	exon	7616763	7616832	+
GWHAAZE00000007	exon	7617308	7617814	+
GWHAAZE00000007	CDS	7610906	7611175	+
GWHAAZE00000007	CDS	7613880	7613981	+
GWHAAZE00000007	CDS	7614065	7614121	+
GWHAAZE00000007	CDS	7615047	7615223	+
GWHAAZE00000007	CDS	7615329	7615415	+
GWHAAZE00000007	CDS	7615511	7615575	+
GWHAAZE00000007	CDS	7615655	7615731	+
GWHAAZE00000007	CDS	7615991	7616051	+
GWHAAZE00000007	CDS	7616763	7616832	+
GWHAAZE00000007	CDS	7617308	7617814	+

Transcript Sequence
>GWHTAAZE023438 ATGGACTCGCAATCTGCTGACTCGTCATCTCAACGCATTGCTAATGTAACATTTCCCCAACCAACGGTGCCTATTCCGGAAGATCAACGGACTGGAAATGCTGGGAGCTCGGCCTTTGCCCGGCTTGCCAGTGGTTTTGGATTGGGTCCAAAAGCATCGGAATCAAATGAGAGTGCTGGAGAAACCTCAGCAGCTGCTCAATCAAGTGTGCTTGAGTCCTTCACAAAAGGTTTAGTTGACACATCAATGAGCGCGATGAAGGCAGTGCAGGAGGGAGGATTTGATTTGGATATGACTTATATAACTGAGAATATAATTGCTATGGGGTTCCCTGCTGGTGATCTAAGCTCGGGTTTTTTTGGATTTGTCGAGGGGTTCTATCGAAATCACATGGAAGAAGTGATCAAGTTTTTCGAAACTCATCATAAGGTTGCATCTTTCCCGTTTGATGATCATAATTGTCCCCCTATTCACCTTATACTATTGTTTTGTCAAAGTGCTTATGCATGGTTAAAGGAAGATATTGTGAATGTAGTAGTTGTTCATTGTAAGGCTGGTAAGGCGAGGACAGGGTTAATGATTTGCAGCCTTCTTCTGTTCTTAAAGTTTTTCCCTACAGCTGAGGAGTGCATTGAGTATTATAACCAGAAAAGATGCGTAGACGCAAAGGGTCTAATTCTCCCAAGCCAGCTTAGGTATGTAAAATACTTCGAACGCATCTTAACAAACTGCAATGGTGAAAATCCACCAGGACGTAGGTGCATGTTAAGGGGATTTCGTCTCCACAAGTGCCCTTATTGGATTAGGCCTTCCATTACAATATCTAATCATAGCGCCGAAGATTTCTGGATTCGGCCAAGGAAAGGGATTGTAGTTTTGCTCTACCAGGGAACCAGTTGGTTAAATACAACAATGATGGAAAACAGAGTACTTCTAAATCCCTCTGATCTTGATGGTTTTGATAAGAGGAAATTGCCCTCACCAGGCTTCCAGGTCGAGATTGTAATGATAGACCATGATGGTACCACTCCAACAAAATACAAACCTAATCAAGCAAACGAGGGATCAGACAGAAGATCAGGCGAGACCCCAACTAATCATGGGGATGCCGCCACTCATTCCAACAAAAGTAAGGCCCCAGAAAACCAAGACAACGACAATGTATTCTCCGACAGCGATGGAGAGGAAACATCGCCTTCAAGAAGAAATACAACTTCAGAACCTGGAATCGGTGCGCCTCCTCAATCTGGCACCACACCAGATCAAATCTCGAATTTGAGACAAGGGACCGAACAACTTTCTATTGGGAGCAAAAATAACACACAGATCAATGCATCAAATGAAAAGAAAAGTGACGGGGATGATGAGAGACCTGCCTCGATTCCTAACTTGGACTCGGGTGATATTAAGGCAATTGCAGCTGATGCTTCTGTTTTCTCTTTCGGAGATGACGAAGATTATGAAAGTGATTGA

Network for GWHGAAZE023408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01110	PTEN	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		FoxO signaling pathway	map04068
		Phosphatidylinositol signaling system	map04070
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Focal adhesion	map04510
		Axon regeneration	map04361
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0016311	biological_process	dephosphorylation
GO:0004725	molecular_function	protein tyrosine phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.565
	SRR3591706	second leaf	0.754
	SRR3591707	mature leaf	0.542
	SRR3591708	Shoot apex	2.235
	SRR3591709	Stem	0.773
	SRR3591710	White floral bud	8.546
	SRR3591711	White flower	7.074
	SRR3591712	Green floral bud	11.481
	SRR3591713	Yellow flower	7.960
SRP173429	SRR8316895	Juvenile bud stage	5.288
	SRR8316896	Juvenile bud stage	8.871
	SRR8316897	Juvenile bud stage	0.153
	SRR8316894	Third green stage	4.268
	SRR8316900	Third green stage	9.528
	SRR8316901	Third green stage	9.840
	SRR8316898	Complete white stage	2.614
	SRR8316899	Complete white stage	7.444
	SRR8316903	Complete white stage	6.181
	SRR8316902	Silver flowering stage	2.792
	SRR8316904	Silver flowering stage	4.831
	SRR8316905	Silver flowering stage	2.056
	SRR8316906	Gold flowering stage	6.592
	SRR8316907	Gold flowering stage	4.957
	SRR8316908	Gold flowering stage	1.580
SRP132670	SRR6706286	Control	10.907
	SRR6706287	Light intensity 50%	10.312
	SRR6706288	Light intensity 20%	11.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.270
	CNS0095593	Slightly white alabastrum(diploid) 2	5.659
	CNS0095594	Slightly white alabastrum(diploid) 3	6.369
	CNS0095595	Whole white alabastrum(diploid) 2	6.761
	CNS0095596	Whole white alabastrum(diploid) 3	8.659
	CNS0095597	Whole white alabastrum(diploid) 4	5.687
	CNS0095598	Silvery flower (diploied) 1	7.706
	CNS0095599	Silvery flower (diploied) 2	4.740
	CNS0095600	Silvery flower (diploied) 3	6.967
	CNS0095601	Golden flower (diploid) 1	5.386
	CNS0095602	Golden flower (diploid) 2	5.586
	CNS0095603	Golden flower (diploid) 3	4.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.147
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.581
	CNS0095610	Silvery flower (tetraploid) 1	6.594
	CNS0095611	Silvery flower (tetraploid) 2	8.442
	CNS0095612	Silvery flower (tetraploid) 3	8.657
	CNS0095613	Golden flower (tetraploid) 1	6.340
	CNS0095614	Golden flower (tetraploid) 2	5.999
	CNS0095615	Golden flower (tetraploid) 3	7.760
CRA001975	CRR073297	Stem 1	7.771
	CRR073298	Stem 2	7.695
	CRR073299	Stem 3	6.026
	CRR073300	Leaf 1	12.516
	CRR073301	Leaf 2	10.413
	CRR073302	Leaf 3	5.062
	CRR073303	Juvenile bud 1	5.269
	CRR073304	Juvenile bud 2	6.347
	CRR073305	Juvenile bud 3	5.323
	CRR073306	Third green 1	3.650
	CRR073307	Third green 2	3.707
	CRR073308	Third green 3	2.020
	CRR073309	Second white 1	2.071
	CRR073310	Second white 2	3.308
	CRR073311	Second white 3	3.595
	CRR073312	Silver flowering 1	2.256
	CRR073313	Silver flowering 2	2.892
	CRR073314	Silver flowering 3	2.974
	CRR073315	Gold flowering 1	2.119
	CRR073316	Gold flowering 2	2.871
	CRR073317	Gold flowering 3	2.671
	CRR073318	Tawny withering 1	4.312
	CRR073319	Tawny withering 2	2.308
	CRR073320	Tawny withering 3	3.898