Detail information of GWHGAAZE023400


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFK39856.16.7562E-107unknown [Lotus japonicus]
COGYP_008797956.10.000006ubiquitin-conjugating enzyme E2-like protein
Swissprottr|Q42551|SCE1_ARATH2E-101SUMO-conjugating enzyme SCE1
trEMBLtr|I3SHW4|I3SHW4_LOTJA3E-107Uncharacterized protein {ECO:0000313|EMBL:AFK39856.1}
TAIR10AT3G57870.19E-80sumo conjugation enzyme 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene74477237451409-
GWHAAZE00000007mRNA74477237451409-
GWHAAZE00000007exon74513387451409-
GWHAAZE00000007exon74511627451245-
GWHAAZE00000007exon74488777449029-
GWHAAZE00000007exon74486357448748-
GWHAAZE00000007exon74477237448049-
GWHAAZE00000007CDS74513387451409-
GWHAAZE00000007CDS74511627451245-
GWHAAZE00000007CDS74488777449029-
GWHAAZE00000007CDS74486357448748-
GWHAAZE00000007CDS74479877448049-
GWHAAZE00000007three_prime_UTR74477237447986-
Transcript Sequence

Network for GWHGAAZE023400

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con101525.20E-44
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10577UBE2I, UBC9 RNA transport map03013
Ubiquitin mediated proteolysismap04120
NF-kappa B signaling pathwaymap04064

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf82.675
SRR3591706second leaf52.514
SRR3591707mature leaf64.919
SRR3591708Shoot apex74.237
SRR3591709Stem223.290
SRR3591710White floral bud44.938
SRR3591711White flower65.713
SRR3591712Green floral bud48.085
SRR3591713Yellow flower48.781
SRP173429 SRR8316895Juvenile bud stage 38.336
SRR8316896Juvenile bud stage 50.642
SRR8316897Juvenile bud stage 24.827
SRR8316894Third green stage 17.001
SRR8316900Third green stage 44.958
SRR8316901Third green stage 45.675
SRR8316898Complete white stage 14.803
SRR8316899Complete white stage 51.431
SRR8316903Complete white stage 22.898
SRR8316902Silver flowering stage32.138
SRR8316904Silver flowering stage33.679
SRR8316905Silver flowering stage16.589
SRR8316906Gold flowering stage 82.137
SRR8316907Gold flowering stage 86.662
SRR8316908Gold flowering stage 97.177
SRP132670SRR6706286Control46.858
SRR6706287Light intensity 50%47.914
SRR6706288Light intensity 20%52.157
CNP0000432CNS0095592Slightly white alabastrum(diploid) 174.859
CNS0095593Slightly white alabastrum(diploid) 264.558
CNS0095594Slightly white alabastrum(diploid) 367.579
CNS0095595Whole white alabastrum(diploid) 259.458
CNS0095596Whole white alabastrum(diploid) 351.376
CNS0095597Whole white alabastrum(diploid) 447.971
CNS0095598Silvery flower (diploied) 178.359
CNS0095599Silvery flower (diploied) 268.450
CNS0095600Silvery flower (diploied) 344.787
CNS0095601Golden flower (diploid) 168.638
CNS0095602Golden flower (diploid) 263.982
CNS0095603Golden flower (diploid) 366.840
CNS0095604Slightly white alabastrum(tetraploid) 165.798
CNS0095605Slightly white alabastrum(tetraploid) 269.505
CNS0095606Slightly white alabastrum(tetraploid) 390.341
CNS0095607Whole white alabastrum(tetraploid) 145.466
CNS0095608Whole white alabastrum(tetraploid) 231.512
CNS0095609Whole white alabastrum(tetraploid) 350.925
CNS0095610Silvery flower (tetraploid) 149.082
CNS0095611Silvery flower (tetraploid) 244.595
CNS0095612Silvery flower (tetraploid) 347.555
CNS0095613Golden flower (tetraploid) 159.388
CNS0095614Golden flower (tetraploid) 250.748
CNS0095615Golden flower (tetraploid) 365.100
CRA001975CRR073297Stem 164.764
CRR073298Stem 255.496
CRR073299Stem 367.824
CRR073300Leaf 142.017
CRR073301Leaf 249.382
CRR073302Leaf 364.765
CRR073303Juvenile bud 154.428
CRR073304Juvenile bud 240.240
CRR073305Juvenile bud 340.525
CRR073306Third green 119.706
CRR073307Third green 230.208
CRR073308Third green 322.166
CRR073309Second white 151.539
CRR073310Second white 243.845
CRR073311Second white 338.633
CRR073312Silver flowering 145.857
CRR073313Silver flowering 260.585
CRR073314Silver flowering 342.156
CRR073315Gold flowering 157.156
CRR073316Gold flowering 251.812
CRR073317Gold flowering 358.614
CRR073318Tawny withering 1146.508
CRR073319Tawny withering 2128.224
CRR073320Tawny withering 3158.131