Gene detail

Detail information of GWHGAAZE023390

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652806.1	0	PREDICTED: DNA polymerase alpha catalytic subunit [Vitis vinifera]
COG	YP_003727376.1	2E-54	DNA polymerase Pol2
Swissprot	tr\|O48653\|DPOLA_ORYSJ	0	DNA polymerase alpha catalytic subunit
trEMBL	tr\|M5WGH3\|M5WGH3_PRUPE	0	DNA polymerase {ECO:0000256\|RuleBase:RU000442}
TAIR10	AT5G67100.1	0	DNA-directed DNA polymerases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7028080	7041990	+
GWHAAZE00000007	mRNA	7028080	7041990	+
GWHAAZE00000007	exon	7028080	7029201	+
GWHAAZE00000007	exon	7030026	7030196	+
GWHAAZE00000007	exon	7030273	7030356	+
GWHAAZE00000007	exon	7030491	7030565	+
GWHAAZE00000007	exon	7031047	7031111	+
GWHAAZE00000007	exon	7032887	7032977	+
GWHAAZE00000007	exon	7033389	7033577	+
GWHAAZE00000007	exon	7033929	7034065	+
GWHAAZE00000007	exon	7034243	7034357	+
GWHAAZE00000007	exon	7034833	7035012	+
GWHAAZE00000007	exon	7035101	7035214	+
GWHAAZE00000007	exon	7035764	7035883	+
GWHAAZE00000007	exon	7035981	7036304	+
GWHAAZE00000007	exon	7036435	7036527	+
GWHAAZE00000007	exon	7037473	7037591	+
GWHAAZE00000007	exon	7037665	7037782	+
GWHAAZE00000007	exon	7037884	7037940	+
GWHAAZE00000007	exon	7038060	7038152	+
GWHAAZE00000007	exon	7038828	7038950	+
GWHAAZE00000007	exon	7039047	7039144	+
GWHAAZE00000007	exon	7039283	7039328	+
GWHAAZE00000007	exon	7039406	7039519	+
GWHAAZE00000007	exon	7039646	7039729	+
GWHAAZE00000007	exon	7039804	7039917	+
GWHAAZE00000007	exon	7040023	7040112	+
GWHAAZE00000007	exon	7040208	7040284	+
GWHAAZE00000007	exon	7040581	7040800	+
GWHAAZE00000007	exon	7041011	7041064	+
GWHAAZE00000007	exon	7041167	7041286	+
GWHAAZE00000007	exon	7041659	7041990	+
GWHAAZE00000007	CDS	7028080	7029201	+
GWHAAZE00000007	CDS	7030026	7030196	+
GWHAAZE00000007	CDS	7030273	7030356	+
GWHAAZE00000007	CDS	7030491	7030565	+
GWHAAZE00000007	CDS	7031047	7031111	+
GWHAAZE00000007	CDS	7032887	7032977	+
GWHAAZE00000007	CDS	7033389	7033577	+
GWHAAZE00000007	CDS	7033929	7034065	+
GWHAAZE00000007	CDS	7034243	7034357	+
GWHAAZE00000007	CDS	7034833	7035012	+
GWHAAZE00000007	CDS	7035101	7035214	+
GWHAAZE00000007	CDS	7035764	7035883	+
GWHAAZE00000007	CDS	7035981	7036304	+
GWHAAZE00000007	CDS	7036435	7036527	+
GWHAAZE00000007	CDS	7037473	7037591	+
GWHAAZE00000007	CDS	7037665	7037782	+
GWHAAZE00000007	CDS	7037884	7037940	+
GWHAAZE00000007	CDS	7038060	7038152	+
GWHAAZE00000007	CDS	7038828	7038950	+
GWHAAZE00000007	CDS	7039047	7039144	+
GWHAAZE00000007	CDS	7039283	7039328	+
GWHAAZE00000007	CDS	7039406	7039519	+
GWHAAZE00000007	CDS	7039646	7039729	+
GWHAAZE00000007	CDS	7039804	7039917	+
GWHAAZE00000007	CDS	7040023	7040112	+
GWHAAZE00000007	CDS	7040208	7040284	+
GWHAAZE00000007	CDS	7040581	7040800	+
GWHAAZE00000007	CDS	7041011	7041064	+
GWHAAZE00000007	CDS	7041167	7041286	+
GWHAAZE00000007	CDS	7041659	7041805	+
GWHAAZE00000007	three_prime_UTR	7041806	7041990	+

Transcript Sequence
>GWHTAAZE023420 ATGACGGACGAACAGCCAATAGTTGCCGGAAGGCGGAGGAGCAAAGGATCAAACGCGGAGGCGCGTACAGAAGCACTCAACCGCCTCAAATCCCTCCGCAGAGGTGGCCGCCGGTCCGAAGGCACCGGATTCCAGATCAAATTAGAAGATCCGATCTACGACACGCTCAGCGAAGACGAGTACAAAGCCCTAGTTGCCAAACGCCGCGAAGAGGACCCAGGGTTTATAGTAGATGATGACGGCTGTGGTTACGGTGATGAAGGACAGGAAGAGGATTGGTCACAAGCTTTTGGACCGCAATCGAGCGATGAATCGGAGAGTGAATTGGAGAAGAGGAAGAAGAAGAAAGTCGAAAAGACCGAAAAGAAGGAAGTGAAAAAGCCTTCCCCTTTATCTGCTGCGGCGGCTTTGATGGGTAAGCAAAGGCTATCTAATATGTTTACTTCTTCGGTTTTTAAGAAGAATAAGGATGATAAGAGTAAAGTTTTATCGTCTGACAGTATTGTTGATGATGTAATTGCTGAATTCGCGCCTGATGAGGCGGATAGGGAGAGGCGTAGGAAGGTACATTCTAATTTATCGTCAGGTTTGAAGTCAATTGCAAAAGTTAAGATTGAGAATCCATCTATTGACGTTATTAATTTAACGGCTAGGGTTGAGAGTAAAAGTGTTAGTGTAAATGATAAATCTTTGGCAATTAGTTTGGATAAAAGTGACAATGTTGATGAAAAGAGGTCAATTGAGATGTCTGAAATTAGGGAAGTTTTTGGTGGTGAAATGGGTGGTGATCCAGTATCGCCATTGCGGAATTCTTTGATTGAGGAAAGTGTAGAGGAGGAGAAATTGAGGAATGATGGTGAAGTGAAGGTAGAGCCAGTGTTGAAGAAGGAAGAGGTGTATACTCTCAATGCTAAATTGAAAGAAGGAAAGGATCCGGCATTGAGTGCAGCTGCTGGGTGGCAGGCAGTGAGGAGTGCAGGAAATGGGAGTAATGTTTGCAATTCAGCTGTGGCCAATCCGGATTTCGTAATGGAGTCCGATGGGTCATTGCCGTTCTACATTCTTGATGCACATGAAGAGTTTTATGGTGCTAATGCAGGCAATATCTATTTATTTGGAAAGGTCAAAGCAGGTAGTACATATCAAAGCTGCTGTGTGGTCGTAAAGAATATGCAGAGATGTGTATATGCAATCCCAAATGGTTCCTTATTTAACAACGGCACTGTTACGAAGCTTGAGAGAGACGCCGAAGAGTCTAAAATTTCCCCTACAGCTTTCCATACGAAGCTACATGAAATAGCATCAGGGTTGAAGAAGGAAATAGCAAAAGAGTTATTGGATCGTAATGTCTCTGGTTTTAGCATGAAACCTGTTAAGAGGAGTTATGCGTTTGAGCGATCTGACATACCTCTTGGAGAGAATTATGTCCTGAAGCTCACCTATCCATTTAAGGATACACCACTCCCCTCAGATCTCAAGGGAGAAACCTTTTGTGCTTTGCTAGGTACTCATTGCAGTGCTTTGGAGCATTTTCTCATAAAGAGGAAGATAAAAGGACCTTCTTGGCTGTCACTTTCAAAATTCTCTAGCTGTCAAGCTCCTCAGCGTGTAAGCTGGTGCAAATTTGAGGTTACTGTTGATTGTCCAAAGGACATACAAGTTTCAACTTCCTCAAAGAATACTGCAGAGATTCCTCCTGTGGTTGTTACAGCAGTAAATCTGAAAACGGCCATCAATGAGAAACACAATGTAAATGAGATTGTCTCTGCATCTGTCATCTGTTGTCACAGGGCTAAGATTGATACTCCCGTGTTAGCCTCAGAGTGGACAAGACCAGGCATGCTTAGTCATTTTACGGTTGTGCGTAAGCTTGATGGAGGCATATTTCCAATGGGGTTTTCAAATGAAGTAGCGGACAAAAATTCAAAGGCCGGTGAAAGAGCTTTGTTAAACCGTTTGATGATTGAATTACACAAATTGGACAGCGATGTTCTCGTTGGGCACAACATATCTGGGTTTGACCTGGATGTTCTTCTTCACAGAGCTCAGTCATGCAAAGTGCCTAGTAGTATGTGGTCCAAAATAGGACGTCTCAAACGCTCTGTTATGCCTAAGCTTACCAAAGGAAGCACCATGTATGGATCCGGAGCGAGTCCCGGGATCATGTCTTGCATTGCGGGCCGGCTCTTATGTGATACGTATTTATGTTCTAGAGACCTATTAAAAGAGGTTAGTTATTCTTTGACACAATTGGCCAACACTCAGCTGAACAAAGATCGAAAGGAGATTGCTCCACATGATATTCCTCGGATGTTCCAGAGTTCTGAATCCTTAATGGGACTTATTGAATGTGGTGAGACGGACGCGTGGTTATCAATGGAGCTTATGTTTCATTTGAGTGTTCTTCCCCTCACACGTCAGCTAACTAATATCAGTGGTAATCTCTGGGGGAAAACTCTCCAGGGTGCTAGGGCTCAAAGAGTGGAATACCTCTTATTGCACGCATTCCATGCGAAGAAATTCATTGTGCCAGACAAGTTTTCTTCCCATGCAAAGGAAATAAAATCGACAAAACGTAAATTGAATAATAGTGTTGATGTCAAAGGAATTGATGAATTGGATGCTGATGATGCTAACATCGAGATTGATTCTTTACACAATGACCATGGGAAAACCAAAAAGGGTCCTTCATATTTAGGTGGATTGGTTTTAGAGCCAAAAAAAGGTTTATATGACAAGTACATATTACTTCTGGACTTCAATAGTCTCTACCCGTCTATTATCCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCACAGGAGGTATCAATTCCCCGTTTACCATCAAGTAGAAAAACCGGAGTTCTACCCGAGTTGCTGAAAAATTTGGTGGAGAGAAGGAGAATGGTAAAGTCATGGTTGAAGACAGCATCTGGTCTCAAAGTCCAGCAGCTTGACATACAGCAGCAAGCGCTGAAGCTCACTGCAAACAGTTTCTTTTTGCTACCTCTTCCCCCTGGGTCTATATCGGCCTGCAGCATGTATGGATGCCTCGGGTTTTCTAATTCCAGATTCTATGCGAAGCCACTTGCAGAGCTTATAACACTACAAGGAAGGGAGATCTTACAAAGTACTGTTGATCTTGTTCAGAATAATTTAAACTTAGAGGTGATCTATGGTGACACAGATTCAATTATGATTTATAGTGGACTAGATGATATTGCAAAAGCCAAGGCAATTGCAGGGAAAGTCATTCAAGAGGTCAACAAGAAGTATAAGTGTTTAGAAATTGATCTTGATGGCTTGTACAAGAGAATGTTGCTACTCAAGAAAAAGAAATATGCAGCTGTCAAAGTACAATTTAGGAATGGAACACCATATGAGGTTATTGAAAGGAAAGGCCTTGATATGGTTCGACGTGACTGGAGTTTACTATCCAAGGAATTAGGAGACTTTTGCCTGAGTCAGATATTGTCCGGAGGGTCATGTGACGATGTTGTTGAATCAATACACACATCACTCATGAAGGTACAGGAGGAAATGAGGAATGGACAAATAGCACTTGAGAAATACGTCATCACAAAGTCATTAACTAAACCACCAGAAGCATATCCTGATGCTAAAACTCAACCTCATGTTGAAGTAGCACTTCGATTGAAGAAAAGTGGTCATGTTACTGGTTGCTCCGCTGGTGACACTGTTCCCTATGTAATCTGCTGTGAACAGGGGAATGGTTCAAGTACCTCGGCAGGGATTGCCCAGCGGGCAAGACATCCTGACGAGTTGACAAAAGACAATGGAAAATGGATGGTTGACATTGATTATTACCTTGCACAACAGATTCATCCAGTGGTATCACGTCTATGCGCCTCAATTGAGGGCACAAGCCCTGCACGCTTGGCTGATTGTTTAGGGCTTGACTCATCCAAGTTCCAAAGCAAATCAATTGAAGCCGTCAACAATGAACCTTCCACCTCACTTTTGGGTTCGGTAGATGATGAGGAGAGATACAAGGGCTGTGAGCCTCTGACTTTGTCGTGTCCAAATTGCTCTGGGACTTTTGACTGCCCAACTGTGTTCAGTTCCATATGTTCATCAATCAATGAAAAGCCAACGGACCCACAAGACGGATTATCAACTAGCAATTTCTGGAGCAAATTACAATGTCCTAAATGCCCAGATGAAGGCGACTCCGGTAGAGCGTCTGCTGCATTAATAGCTAACCAGGTTAAAAGACAAGCAGAAGGATTCATTGCAAGATACTACAAAGGCTTAATGACGTGTGACGATGAAACTTGTAAGTACACTACCCGAAGTCTGAACTTGCGAGTAATTGGCGACTCTGAGAGAGGAACTGTTTGTCCAAACTACCCTCGTTGTAATGGACGTCTTGTGAGAAAGATAGAGGCCAAGGTTAGAATACCAGTTGAGAAAGAGCTTGCAAGAATAAGGCCTATGGTTGAATTGGCAGCATCAACTGTCCGGAAGATGAGGGATAGGTGTGCTTATGGGTGGGTGCAGCTCAAGGACCTTATTGTCACCATTTAACTCTGCTAATTTGACAAATCGGTTGATCTGGAAGGTCAAAGAGCCTGAAGTATTACTAGAGGATTTGTAATTATGTGTAGAATTTTCATTTTTGTAGATTAATTTGTATTTCAATGTTGCTAAAGCTCATAAATCGAGTGTGCGAGTCGTAGTCACCCTGTATTAAGACAAAGTATATTACTCCG

Network for GWHGAAZE023390

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12254.9	DNA_pol_alpha_N	26	93	1.10E-19
PF03104.20	DNA_pol_B_exo1	381	749	4.80E-27
PF00136.22	DNA_pol_B	815	1002	5.80E-41
PF00136.22	DNA_pol_B	1011	1293	1.80E-73
PF08996.11	zf-DNA_Pol	1333	1471	6.10E-24

Protein Sequence

>GWHPAAZE023406
MTDEQPIVAGRRRSKGSNAEARTEALNRLKSLRRGGRRSEGTGFQIKLEDPIYDTLSEDEYKALVAKRREEDPGFIVDDDGCGYGDEGQEEDWSQAFGPQSSDESESELEKRKKKKVEKTEKKEVKKPSPLSAAAALMGKQRLSNMFTSSVFKKNKDDKSKVLSSDSIVDDVIAEFAPDEADRERRRKVHSNLSSGLKSIAKVKIENPSIDVINLTARVESKSVSVNDKSLAISLDKSDNVDEKRSIEMSEIREVFGGEMGGDPVSPLRNSLIEESVEEEKLRNDGEVKVEPVLKKEEVYTLNAKLKEGKDPALSAAAGWQAVRSAGNGSNVCNSAVANPDFVMESDGSLPFYILDAHEEFYGANAGNIYLFGKVKAGSTYQSCCVVVKNMQRCVYAIPNGSLFNNGTVTKLERDAEESKISPTAFHTKLHEIASGLKKEIAKELLDRNVSGFSMKPVKRSYAFERSDIPLGENYVLKLTYPFKDTPLPSDLKGETFCALLGTHCSALEHFLIKRKIKGPSWLSLSKFSSCQAPQRVSWCKFEVTVDCPKDIQVSTSSKNTAEIPPVVVTAVNLKTAINEKHNVNEIVSASVICCHRAKIDTPVLASEWTRPGMLSHFTVVRKLDGGIFPMGFSNEVADKNSKAGERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRAQSCKVPSSMWSKIGRLKRSVMPKLTKGSTMYGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLANTQLNKDRKEIAPHDIPRMFQSSESLMGLIECGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKFIVPDKFSSHAKEIKSTKRKLNNSVDVKGIDELDADDANIEIDSLHNDHGKTKKGPSYLGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQEVSIPRLPSSRKTGVLPELLKNLVERRRMVKSWLKTASGLKVQQLDIQQQALKLTANSFFLLPLPPGSISACSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFRNGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCDDVVESIHTSLMKVQEEMRNGQIALEKYVITKSLTKPPEAYPDAKTQPHVEVALRLKKSGHVTGCSAGDTVPYVICCEQGNGSSTSAGIAQRARHPDELTKDNGKWMVDIDYYLAQQIHPVVSRLCASIEGTSPARLADCLGLDSSKFQSKSIEAVNNEPSTSLLGSVDDEERYKGCEPLTLSCPNCSGTFDCPTVFSSICSSINEKPTDPQDGLSTSNFWSKLQCPKCPDEGDSGRASAALIANQVKRQAEGFIARYYKGLMTCDDETCKYTTRSLNLRVIGDSERGTVCPNYPRCNGRLVRKIEAKVRIPVEKELARIRPMVELAASTVRKMRDRCAYGWVQLKDLIVTI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02320	POLA1	DNA replication	map03030

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0000166	molecular_function	nucleotide binding
GO:0003676	molecular_function	nucleic acid binding
GO:0003887	molecular_function	DNA-directed DNA polymerase activity
GO:0003677	molecular_function	DNA binding
GO:0001882	molecular_function	nucleoside binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.862
	SRR3591706	second leaf	2.196
	SRR3591707	mature leaf	0.353
	SRR3591708	Shoot apex	18.591
	SRR3591709	Stem	2.047
	SRR3591710	White floral bud	1.076
	SRR3591711	White flower	0.577
	SRR3591712	Green floral bud	1.426
	SRR3591713	Yellow flower	0.176
SRP173429	SRR8316895	Juvenile bud stage	2.881
	SRR8316896	Juvenile bud stage	3.235
	SRR8316897	Juvenile bud stage	1.742
	SRR8316894	Third green stage	1.216
	SRR8316900	Third green stage	1.550
	SRR8316901	Third green stage	0.816
	SRR8316898	Complete white stage	0.048
	SRR8316899	Complete white stage	1.097
	SRR8316903	Complete white stage	0.253
	SRR8316902	Silver flowering stage	0.037
	SRR8316904	Silver flowering stage	0.120
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.069
	SRR8316907	Gold flowering stage	0.056
	SRR8316908	Gold flowering stage	0.339
SRP132670	SRR6706286	Control	1.437
	SRR6706287	Light intensity 50%	1.721
	SRR6706288	Light intensity 20%	1.945
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.646
	CNS0095593	Slightly white alabastrum(diploid) 2	1.295
	CNS0095594	Slightly white alabastrum(diploid) 3	2.173
	CNS0095595	Whole white alabastrum(diploid) 2	1.177
	CNS0095596	Whole white alabastrum(diploid) 3	0.547
	CNS0095597	Whole white alabastrum(diploid) 4	0.546
	CNS0095598	Silvery flower (diploied) 1	1.651
	CNS0095599	Silvery flower (diploied) 2	2.739
	CNS0095600	Silvery flower (diploied) 3	0.677
	CNS0095601	Golden flower (diploid) 1	1.059
	CNS0095602	Golden flower (diploid) 2	0.514
	CNS0095603	Golden flower (diploid) 3	0.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.923
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.493
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.609
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.914
	CNS0095610	Silvery flower (tetraploid) 1	1.033
	CNS0095611	Silvery flower (tetraploid) 2	0.968
	CNS0095612	Silvery flower (tetraploid) 3	0.703
	CNS0095613	Golden flower (tetraploid) 1	0.162
	CNS0095614	Golden flower (tetraploid) 2	0.411
	CNS0095615	Golden flower (tetraploid) 3	0.306
CRA001975	CRR073297	Stem 1	5.930
	CRR073298	Stem 2	3.914
	CRR073299	Stem 3	4.232
	CRR073300	Leaf 1	1.551
	CRR073301	Leaf 2	1.594
	CRR073302	Leaf 3	0.762
	CRR073303	Juvenile bud 1	1.251
	CRR073304	Juvenile bud 2	0.287
	CRR073305	Juvenile bud 3	0.893
	CRR073306	Third green 1	0.012
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.176
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.064
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.038
	CRR073315	Gold flowering 1	0.239
	CRR073316	Gold flowering 2	0.388
	CRR073317	Gold flowering 3	0.138
	CRR073318	Tawny withering 1	4.499
	CRR073319	Tawny withering 2	3.573
	CRR073320	Tawny withering 3	5.254