Detail information of GWHGAAZE023388


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011099132.10PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Sesamum indicum]
COGYP_001564663.10.00000004RNP-1 like RNA-binding protein
Swissprottr|Q8W034|RNP1_ARATH2E-33Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|D7SVX4|D7SVX4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI21423.3}
TAIR10AT4G36960.24E-146RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene69958536999754-
GWHAAZE00000007mRNA69958536999754-
GWHAAZE00000007exon69958536995897-
GWHAAZE00000007exon69960376996183-
GWHAAZE00000007exon69966526996756-
GWHAAZE00000007exon69968746997001-
GWHAAZE00000007exon69970756997216-
GWHAAZE00000007exon69973736997473-
GWHAAZE00000007exon69977616997815-
GWHAAZE00000007exon69979636998008-
GWHAAZE00000007exon69981766998261-
GWHAAZE00000007exon69984266998491-
GWHAAZE00000007exon69986866998751-
GWHAAZE00000007exon69995306999619-
GWHAAZE00000007exon69997346999754-
GWHAAZE00000007CDS69997346999754-
GWHAAZE00000007CDS69995306999619-
GWHAAZE00000007CDS69986866998751-
GWHAAZE00000007CDS69984266998491-
GWHAAZE00000007CDS69981766998261-
GWHAAZE00000007CDS69979636998008-
GWHAAZE00000007CDS69977616997815-
GWHAAZE00000007CDS69973736997473-
GWHAAZE00000007CDS69970756997216-
GWHAAZE00000007CDS69968746997001-
GWHAAZE00000007CDS69966526996756-
GWHAAZE00000007CDS69960376996183-
GWHAAZE00000007CDS69958536995897-
Transcript Sequence

Network for GWHGAAZE023388

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_16648.80E-12
PF00076.23RRM_1941521.30E-11
PF00076.23RRM_12362901.00E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf59.433
SRR3591706second leaf44.926
SRR3591707mature leaf37.673
SRR3591708Shoot apex71.889
SRR3591709Stem61.351
SRR3591710White floral bud56.649
SRR3591711White flower57.150
SRR3591712Green floral bud52.850
SRR3591713Yellow flower67.555
SRP173429 SRR8316895Juvenile bud stage 45.153
SRR8316896Juvenile bud stage 59.826
SRR8316897Juvenile bud stage 27.686
SRR8316894Third green stage 25.279
SRR8316900Third green stage 60.822
SRR8316901Third green stage 65.390
SRR8316898Complete white stage 28.147
SRR8316899Complete white stage 97.379
SRR8316903Complete white stage 55.918
SRR8316902Silver flowering stage31.156
SRR8316904Silver flowering stage41.254
SRR8316905Silver flowering stage21.668
SRR8316906Gold flowering stage 88.500
SRR8316907Gold flowering stage 85.668
SRR8316908Gold flowering stage 81.015
SRP132670SRR6706286Control76.289
SRR6706287Light intensity 50%78.042
SRR6706288Light intensity 20%84.752
CNP0000432CNS0095592Slightly white alabastrum(diploid) 153.100
CNS0095593Slightly white alabastrum(diploid) 262.458
CNS0095594Slightly white alabastrum(diploid) 350.525
CNS0095595Whole white alabastrum(diploid) 246.971
CNS0095596Whole white alabastrum(diploid) 343.016
CNS0095597Whole white alabastrum(diploid) 446.121
CNS0095598Silvery flower (diploied) 165.582
CNS0095599Silvery flower (diploied) 262.128
CNS0095600Silvery flower (diploied) 354.322
CNS0095601Golden flower (diploid) 160.919
CNS0095602Golden flower (diploid) 258.219
CNS0095603Golden flower (diploid) 358.740
CNS0095604Slightly white alabastrum(tetraploid) 150.647
CNS0095605Slightly white alabastrum(tetraploid) 247.081
CNS0095606Slightly white alabastrum(tetraploid) 388.267
CNS0095607Whole white alabastrum(tetraploid) 132.465
CNS0095608Whole white alabastrum(tetraploid) 224.332
CNS0095609Whole white alabastrum(tetraploid) 355.152
CNS0095610Silvery flower (tetraploid) 168.851
CNS0095611Silvery flower (tetraploid) 255.219
CNS0095612Silvery flower (tetraploid) 357.239
CNS0095613Golden flower (tetraploid) 152.084
CNS0095614Golden flower (tetraploid) 263.974
CNS0095615Golden flower (tetraploid) 360.049
CRA001975CRR073297Stem 152.631
CRR073298Stem 247.925
CRR073299Stem 347.638
CRR073300Leaf 157.252
CRR073301Leaf 254.779
CRR073302Leaf 344.155
CRR073303Juvenile bud 149.676
CRR073304Juvenile bud 236.043
CRR073305Juvenile bud 358.042
CRR073306Third green 129.562
CRR073307Third green 226.635
CRR073308Third green 327.262
CRR073309Second white 131.933
CRR073310Second white 230.698
CRR073311Second white 329.539
CRR073312Silver flowering 130.996
CRR073313Silver flowering 223.508
CRR073314Silver flowering 323.297
CRR073315Gold flowering 120.315
CRR073316Gold flowering 223.623
CRR073317Gold flowering 316.609
CRR073318Tawny withering 147.267
CRR073319Tawny withering 252.483
CRR073320Tawny withering 343.582