Detail information of GWHGAAZE023384


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009375706.11.1944E-139PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Pyrus x bretschneideri]
Swissprottr|Q8LDU4|RCCR_ARATH1E-108Red chlorophyll catabolite reductase, chloroplastic (Precursor)
trEMBLtr|M5WA01|M5WA01_PRUPE2E-138Uncharacterized protein {ECO:0000313|EMBL:EMJ03625.1}
TAIR10AT4G37000.13E-88accelerated cell death 2 (ACD2)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene69332776938566-
GWHAAZE00000007mRNA69332776938566-
GWHAAZE00000007exon69383486938566-
GWHAAZE00000007exon69332776933888-
GWHAAZE00000007CDS69383486938566-
GWHAAZE00000007CDS69332776933888-
Transcript Sequence

Network for GWHGAAZE023384

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06405.12RCC_reductase202726.70E-124
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13545RCCR, ACD2 Biosynthesis of secondary metabolites map01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0051743molecular_functionred chlorophyll catabolite reductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.453
SRR3591706second leaf23.253
SRR3591707mature leaf31.841
SRR3591708Shoot apex29.797
SRR3591709Stem27.187
SRR3591710White floral bud28.214
SRR3591711White flower41.231
SRR3591712Green floral bud30.221
SRR3591713Yellow flower47.897
SRP173429 SRR8316895Juvenile bud stage 16.336
SRR8316896Juvenile bud stage 25.075
SRR8316897Juvenile bud stage 10.682
SRR8316894Third green stage 11.474
SRR8316900Third green stage 35.915
SRR8316901Third green stage 29.682
SRR8316898Complete white stage 10.442
SRR8316899Complete white stage 41.305
SRR8316903Complete white stage 19.677
SRR8316902Silver flowering stage10.295
SRR8316904Silver flowering stage14.597
SRR8316905Silver flowering stage6.933
SRR8316906Gold flowering stage 21.632
SRR8316907Gold flowering stage 24.760
SRR8316908Gold flowering stage 23.775
SRP132670SRR6706286Control39.860
SRR6706287Light intensity 50%40.160
SRR6706288Light intensity 20%43.299
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.247
CNS0095593Slightly white alabastrum(diploid) 222.525
CNS0095594Slightly white alabastrum(diploid) 318.957
CNS0095595Whole white alabastrum(diploid) 224.753
CNS0095596Whole white alabastrum(diploid) 324.537
CNS0095597Whole white alabastrum(diploid) 418.953
CNS0095598Silvery flower (diploied) 126.368
CNS0095599Silvery flower (diploied) 223.243
CNS0095600Silvery flower (diploied) 334.137
CNS0095601Golden flower (diploid) 128.992
CNS0095602Golden flower (diploid) 233.708
CNS0095603Golden flower (diploid) 331.318
CNS0095604Slightly white alabastrum(tetraploid) 133.985
CNS0095605Slightly white alabastrum(tetraploid) 224.361
CNS0095606Slightly white alabastrum(tetraploid) 335.112
CNS0095607Whole white alabastrum(tetraploid) 120.416
CNS0095608Whole white alabastrum(tetraploid) 214.016
CNS0095609Whole white alabastrum(tetraploid) 327.536
CNS0095610Silvery flower (tetraploid) 129.448
CNS0095611Silvery flower (tetraploid) 241.375
CNS0095612Silvery flower (tetraploid) 328.304
CNS0095613Golden flower (tetraploid) 131.488
CNS0095614Golden flower (tetraploid) 240.628
CNS0095615Golden flower (tetraploid) 332.244
CRA001975CRR073297Stem 161.258
CRR073298Stem 261.741
CRR073299Stem 377.014
CRR073300Leaf 166.713
CRR073301Leaf 273.304
CRR073302Leaf 384.088
CRR073303Juvenile bud 184.639
CRR073304Juvenile bud 269.923
CRR073305Juvenile bud 372.199
CRR073306Third green 121.236
CRR073307Third green 227.745
CRR073308Third green 326.536
CRR073309Second white 136.792
CRR073310Second white 229.182
CRR073311Second white 325.617
CRR073312Silver flowering 124.295
CRR073313Silver flowering 230.053
CRR073314Silver flowering 328.373
CRR073315Gold flowering 198.825
CRR073316Gold flowering 2128.934
CRR073317Gold flowering 3106.172
CRR073318Tawny withering 175.294
CRR073319Tawny withering 249.519
CRR073320Tawny withering 353.565