Detail information of GWHGAAZE023362


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADU55794.13.18542E-89HSP18.1B [Citrullus lanatus]
COGYP_005887446.16E-24heat shock protein Hsp20
Swissprottr|P27880|HSP12_MEDSA7E-9018.2 kDa class I heat shock protein
trEMBLtr|H6TB47|H6TB47_CITLA1E-89HSP18.1B {ECO:0000313|EMBL:ADU55794.1}
TAIR10AT5G59720.17E-55heat shock protein 18.2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene63248986325371-
GWHAAZE00000007mRNA63248986325371-
GWHAAZE00000007exon63248986325371-
GWHAAZE00000007CDS63248986325371-
Transcript Sequence

Network for GWHGAAZE023362

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20531563.00E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.292
SRR3591706second leaf6.102
SRR3591707mature leaf5.570
SRR3591708Shoot apex6.106
SRR3591709Stem4.020
SRR3591710White floral bud0.596
SRR3591711White flower1.735
SRR3591712Green floral bud1.588
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 60.085
SRR8316896Juvenile bud stage 549.759
SRR8316897Juvenile bud stage 85.139
SRR8316894Third green stage 1.121
SRR8316900Third green stage 5.444
SRR8316901Third green stage 10.824
SRR8316898Complete white stage 0.553
SRR8316899Complete white stage 1.170
SRR8316903Complete white stage 1.439
SRR8316902Silver flowering stage0.510
SRR8316904Silver flowering stage0.504
SRR8316905Silver flowering stage0.648
SRR8316906Gold flowering stage 1.407
SRR8316907Gold flowering stage 0.757
SRR8316908Gold flowering stage 0.668
SRP132670SRR6706286Control7.769
SRR6706287Light intensity 50%3.816
SRR6706288Light intensity 20%3.833
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.003
CNS0095593Slightly white alabastrum(diploid) 29.236
CNS0095594Slightly white alabastrum(diploid) 312.934
CNS0095595Whole white alabastrum(diploid) 25.329
CNS0095596Whole white alabastrum(diploid) 36.684
CNS0095597Whole white alabastrum(diploid) 45.119
CNS0095598Silvery flower (diploied) 120.050
CNS0095599Silvery flower (diploied) 2360.710
CNS0095600Silvery flower (diploied) 399.720
CNS0095601Golden flower (diploid) 1975.223
CNS0095602Golden flower (diploid) 2125.918
CNS0095603Golden flower (diploid) 3126.586
CNS0095604Slightly white alabastrum(tetraploid) 112.156
CNS0095605Slightly white alabastrum(tetraploid) 215.912
CNS0095606Slightly white alabastrum(tetraploid) 319.854
CNS0095607Whole white alabastrum(tetraploid) 17.164
CNS0095608Whole white alabastrum(tetraploid) 25.935
CNS0095609Whole white alabastrum(tetraploid) 312.282
CNS0095610Silvery flower (tetraploid) 11.962
CNS0095611Silvery flower (tetraploid) 212.341
CNS0095612Silvery flower (tetraploid) 317.395
CNS0095613Golden flower (tetraploid) 18.253
CNS0095614Golden flower (tetraploid) 23.747
CNS0095615Golden flower (tetraploid) 31.420
CRA001975CRR073297Stem 14.579
CRR073298Stem 23.454
CRR073299Stem 310.197
CRR073300Leaf 14.975
CRR073301Leaf 23.770
CRR073302Leaf 33.871
CRR073303Juvenile bud 11.172
CRR073304Juvenile bud 21.962
CRR073305Juvenile bud 31.169
CRR073306Third green 10.349
CRR073307Third green 21.863
CRR073308Third green 31.967
CRR073309Second white 10.166
CRR073310Second white 20.310
CRR073311Second white 30.301
CRR073312Silver flowering 10.292
CRR073313Silver flowering 20.960
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.892
CRR073316Gold flowering 24.695
CRR073317Gold flowering 34.460
CRR073318Tawny withering 112.977
CRR073319Tawny withering 23.114
CRR073320Tawny withering 39.760