Detail information of GWHGAAZE023361


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADU55794.19.69892E-90HSP18.1B [Citrullus lanatus]
COGYP_003798088.13E-24heat shock protein, hsp20 family
Swissprottr|P27880|HSP12_MEDSA5E-9018.2 kDa class I heat shock protein
trEMBLtr|H6TB47|H6TB47_CITLA4E-90HSP18.1B {ECO:0000313|EMBL:ADU55794.1}
TAIR10AT5G59720.15E-55heat shock protein 18.2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene63137366314209-
GWHAAZE00000007mRNA63137366314209-
GWHAAZE00000007exon63137366314209-
GWHAAZE00000007CDS63137366314209-
Transcript Sequence

Network for GWHGAAZE023361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20531563.00E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.327
SRR3591706second leaf5.507
SRR3591707mature leaf4.260
SRR3591708Shoot apex4.469
SRR3591709Stem2.774
SRR3591710White floral bud0.543
SRR3591711White flower1.318
SRR3591712Green floral bud1.272
SRR3591713Yellow flower0.031
SRP173429 SRR8316895Juvenile bud stage 53.357
SRR8316896Juvenile bud stage 380.024
SRR8316897Juvenile bud stage 88.000
SRR8316894Third green stage 0.818
SRR8316900Third green stage 2.869
SRR8316901Third green stage 5.803
SRR8316898Complete white stage 0.373
SRR8316899Complete white stage 0.830
SRR8316903Complete white stage 1.030
SRR8316902Silver flowering stage0.811
SRR8316904Silver flowering stage0.699
SRR8316905Silver flowering stage0.189
SRR8316906Gold flowering stage 1.270
SRR8316907Gold flowering stage 0.715
SRR8316908Gold flowering stage 0.868
SRP132670SRR6706286Control5.821
SRR6706287Light intensity 50%3.072
SRR6706288Light intensity 20%2.334
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.158
CNS0095593Slightly white alabastrum(diploid) 26.069
CNS0095594Slightly white alabastrum(diploid) 310.106
CNS0095595Whole white alabastrum(diploid) 23.943
CNS0095596Whole white alabastrum(diploid) 34.289
CNS0095597Whole white alabastrum(diploid) 43.927
CNS0095598Silvery flower (diploied) 119.658
CNS0095599Silvery flower (diploied) 2250.043
CNS0095600Silvery flower (diploied) 374.683
CNS0095601Golden flower (diploid) 1609.402
CNS0095602Golden flower (diploid) 2105.656
CNS0095603Golden flower (diploid) 3113.081
CNS0095604Slightly white alabastrum(tetraploid) 115.976
CNS0095605Slightly white alabastrum(tetraploid) 220.846
CNS0095606Slightly white alabastrum(tetraploid) 326.623
CNS0095607Whole white alabastrum(tetraploid) 110.575
CNS0095608Whole white alabastrum(tetraploid) 25.861
CNS0095609Whole white alabastrum(tetraploid) 312.433
CNS0095610Silvery flower (tetraploid) 13.203
CNS0095611Silvery flower (tetraploid) 214.019
CNS0095612Silvery flower (tetraploid) 319.569
CNS0095613Golden flower (tetraploid) 18.445
CNS0095614Golden flower (tetraploid) 24.000
CNS0095615Golden flower (tetraploid) 31.151
CRA001975CRR073297Stem 12.858
CRR073298Stem 22.370
CRR073299Stem 35.027
CRR073300Leaf 13.640
CRR073301Leaf 22.382
CRR073302Leaf 32.306
CRR073303Juvenile bud 10.730
CRR073304Juvenile bud 20.504
CRR073305Juvenile bud 30.899
CRR073306Third green 10.044
CRR073307Third green 20.942
CRR073308Third green 30.545
CRR073309Second white 10.275
CRR073310Second white 20.247
CRR073311Second white 30.379
CRR073312Silver flowering 10.561
CRR073313Silver flowering 21.262
CRR073314Silver flowering 30.098
CRR073315Gold flowering 11.424
CRR073316Gold flowering 23.735
CRR073317Gold flowering 35.137
CRR073318Tawny withering 112.590
CRR073319Tawny withering 24.171
CRR073320Tawny withering 312.907