Detail information of GWHGAAZE023360


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADU55794.19.69892E-90HSP18.1B [Citrullus lanatus]
COGYP_003798088.13E-24heat shock protein, hsp20 family
Swissprottr|P27880|HSP12_MEDSA5E-9018.2 kDa class I heat shock protein
trEMBLtr|H6TB47|H6TB47_CITLA4E-90HSP18.1B {ECO:0000313|EMBL:ADU55794.1}
TAIR10AT5G59720.15E-55heat shock protein 18.2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene63024866302959-
GWHAAZE00000007mRNA63024866302959-
GWHAAZE00000007exon63024866302959-
GWHAAZE00000007CDS63024866302959-
Transcript Sequence

Network for GWHGAAZE023360

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20531563.00E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.411
SRR3591706second leaf4.162
SRR3591707mature leaf3.641
SRR3591708Shoot apex3.727
SRR3591709Stem1.791
SRR3591710White floral bud0.355
SRR3591711White flower0.834
SRR3591712Green floral bud1.269
SRR3591713Yellow flower0.031
SRP173429 SRR8316895Juvenile bud stage 47.474
SRR8316896Juvenile bud stage 355.332
SRR8316897Juvenile bud stage 65.892
SRR8316894Third green stage 0.773
SRR8316900Third green stage 2.740
SRR8316901Third green stage 5.738
SRR8316898Complete white stage 0.357
SRR8316899Complete white stage 0.882
SRR8316903Complete white stage 0.983
SRR8316902Silver flowering stage0.636
SRR8316904Silver flowering stage0.522
SRR8316905Silver flowering stage0.107
SRR8316906Gold flowering stage 1.097
SRR8316907Gold flowering stage 0.543
SRR8316908Gold flowering stage 0.550
SRP132670SRR6706286Control6.056
SRR6706287Light intensity 50%3.002
SRR6706288Light intensity 20%2.231
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.307
CNS0095593Slightly white alabastrum(diploid) 26.557
CNS0095594Slightly white alabastrum(diploid) 39.253
CNS0095595Whole white alabastrum(diploid) 23.415
CNS0095596Whole white alabastrum(diploid) 33.849
CNS0095597Whole white alabastrum(diploid) 43.369
CNS0095598Silvery flower (diploied) 117.686
CNS0095599Silvery flower (diploied) 2223.606
CNS0095600Silvery flower (diploied) 368.096
CNS0095601Golden flower (diploid) 1626.980
CNS0095602Golden flower (diploid) 299.149
CNS0095603Golden flower (diploid) 392.561
CNS0095604Slightly white alabastrum(tetraploid) 18.815
CNS0095605Slightly white alabastrum(tetraploid) 211.635
CNS0095606Slightly white alabastrum(tetraploid) 314.473
CNS0095607Whole white alabastrum(tetraploid) 16.053
CNS0095608Whole white alabastrum(tetraploid) 23.666
CNS0095609Whole white alabastrum(tetraploid) 38.059
CNS0095610Silvery flower (tetraploid) 11.861
CNS0095611Silvery flower (tetraploid) 28.878
CNS0095612Silvery flower (tetraploid) 312.400
CNS0095613Golden flower (tetraploid) 16.215
CNS0095614Golden flower (tetraploid) 22.605
CNS0095615Golden flower (tetraploid) 30.830
CRA001975CRR073297Stem 12.614
CRR073298Stem 22.341
CRR073299Stem 35.246
CRR073300Leaf 13.727
CRR073301Leaf 22.285
CRR073302Leaf 32.543
CRR073303Juvenile bud 10.735
CRR073304Juvenile bud 20.523
CRR073305Juvenile bud 30.921
CRR073306Third green 10.064
CRR073307Third green 20.466
CRR073308Third green 30.590
CRR073309Second white 10.448
CRR073310Second white 20.266
CRR073311Second white 30.415
CRR073312Silver flowering 10.558
CRR073313Silver flowering 21.175
CRR073314Silver flowering 30.157
CRR073315Gold flowering 11.504
CRR073316Gold flowering 23.629
CRR073317Gold flowering 35.556
CRR073318Tawny withering 111.706
CRR073319Tawny withering 24.323
CRR073320Tawny withering 312.720