Detail information of GWHGAAZE023359


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADU55794.19.69892E-90HSP18.1B [Citrullus lanatus]
COGYP_003798088.13E-24heat shock protein, hsp20 family
Swissprottr|P27880|HSP12_MEDSA5E-9018.2 kDa class I heat shock protein
trEMBLtr|H6TB47|H6TB47_CITLA4E-90HSP18.1B {ECO:0000313|EMBL:ADU55794.1}
TAIR10AT5G59720.15E-55heat shock protein 18.2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene62901576290630-
GWHAAZE00000007mRNA62901576290630-
GWHAAZE00000007exon62901576290630-
GWHAAZE00000007CDS62901576290630-
Transcript Sequence

Network for GWHGAAZE023359

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00011.22HSP20531563.00E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13993HSP20 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.937
SRR3591706second leaf3.512
SRR3591707mature leaf4.313
SRR3591708Shoot apex3.628
SRR3591709Stem1.654
SRR3591710White floral bud0.258
SRR3591711White flower0.953
SRR3591712Green floral bud0.842
SRR3591713Yellow flower0.015
SRP173429 SRR8316895Juvenile bud stage 46.362
SRR8316896Juvenile bud stage 338.037
SRR8316897Juvenile bud stage 74.566
SRR8316894Third green stage 0.644
SRR8316900Third green stage 2.882
SRR8316901Third green stage 5.326
SRR8316898Complete white stage 0.222
SRR8316899Complete white stage 0.769
SRR8316903Complete white stage 0.890
SRR8316902Silver flowering stage0.494
SRR8316904Silver flowering stage0.437
SRR8316905Silver flowering stage0.112
SRR8316906Gold flowering stage 1.377
SRR8316907Gold flowering stage 1.071
SRR8316908Gold flowering stage 1.508
SRP132670SRR6706286Control6.181
SRR6706287Light intensity 50%3.099
SRR6706288Light intensity 20%2.407
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.131
CNS0095593Slightly white alabastrum(diploid) 25.291
CNS0095594Slightly white alabastrum(diploid) 38.380
CNS0095595Whole white alabastrum(diploid) 23.254
CNS0095596Whole white alabastrum(diploid) 33.601
CNS0095597Whole white alabastrum(diploid) 42.814
CNS0095598Silvery flower (diploied) 115.581
CNS0095599Silvery flower (diploied) 2185.026
CNS0095600Silvery flower (diploied) 359.804
CNS0095601Golden flower (diploid) 1514.031
CNS0095602Golden flower (diploid) 292.342
CNS0095603Golden flower (diploid) 395.673
CNS0095604Slightly white alabastrum(tetraploid) 18.173
CNS0095605Slightly white alabastrum(tetraploid) 213.130
CNS0095606Slightly white alabastrum(tetraploid) 313.369
CNS0095607Whole white alabastrum(tetraploid) 16.456
CNS0095608Whole white alabastrum(tetraploid) 23.878
CNS0095609Whole white alabastrum(tetraploid) 38.218
CNS0095610Silvery flower (tetraploid) 12.002
CNS0095611Silvery flower (tetraploid) 29.114
CNS0095612Silvery flower (tetraploid) 312.561
CNS0095613Golden flower (tetraploid) 15.191
CNS0095614Golden flower (tetraploid) 22.510
CNS0095615Golden flower (tetraploid) 30.827
CRA001975CRR073297Stem 13.064
CRR073298Stem 21.807
CRR073299Stem 34.869
CRR073300Leaf 13.490
CRR073301Leaf 22.751
CRR073302Leaf 32.234
CRR073303Juvenile bud 10.361
CRR073304Juvenile bud 20.331
CRR073305Juvenile bud 30.881
CRR073306Third green 10.100
CRR073307Third green 20.297
CRR073308Third green 30.915
CRR073309Second white 10.335
CRR073310Second white 20.291
CRR073311Second white 30.525
CRR073312Silver flowering 10.487
CRR073313Silver flowering 22.160
CRR073314Silver flowering 30.137
CRR073315Gold flowering 12.713
CRR073316Gold flowering 24.850
CRR073317Gold flowering 34.309
CRR073318Tawny withering 19.598
CRR073319Tawny withering 24.781
CRR073320Tawny withering 312.074