Gene detail

Detail information of GWHGAAZE023357

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02477.1	0	unnamed protein product [Coffea canephora]
COG	YP_007468874.1	2E-23	serine/threonine protein kinase
Swissprot	tr\|P53681\|CRK_DAUCA	0	CDPK-related protein kinase
trEMBL	tr\|Q8W559\|Q8W559_TOBAC	0	Calcium/calmodulin-dependent protein kinase CaMK3 {ECO:0000313\|EMBL:AAL30820.1}
TAIR10	AT3G50530.1	0	CDPK-related kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	6171814	6179146	+
GWHAAZE00000007	mRNA	6171814	6179146	+
GWHAAZE00000007	exon	6171814	6172362	+
GWHAAZE00000007	exon	6172459	6172489	+
GWHAAZE00000007	exon	6172978	6173084	+
GWHAAZE00000007	exon	6173192	6173322	+
GWHAAZE00000007	exon	6173711	6173819	+
GWHAAZE00000007	exon	6174070	6174148	+
GWHAAZE00000007	exon	6174448	6174764	+
GWHAAZE00000007	exon	6176455	6176562	+
GWHAAZE00000007	exon	6176646	6176708	+
GWHAAZE00000007	exon	6177003	6177209	+
GWHAAZE00000007	exon	6179006	6179146	+
GWHAAZE00000007	CDS	6171814	6172362	+
GWHAAZE00000007	CDS	6172459	6172489	+
GWHAAZE00000007	CDS	6172978	6173084	+
GWHAAZE00000007	CDS	6173192	6173322	+
GWHAAZE00000007	CDS	6173711	6173819	+
GWHAAZE00000007	CDS	6174070	6174148	+
GWHAAZE00000007	CDS	6174448	6174764	+
GWHAAZE00000007	CDS	6176455	6176562	+
GWHAAZE00000007	CDS	6176646	6176708	+
GWHAAZE00000007	CDS	6177003	6177209	+
GWHAAZE00000007	CDS	6179006	6179146	+

Transcript Sequence
>GWHTAAZE023387 ATGGGTATTTGCACTTCCAAACCCTCCCCAGAACCTTATCTTTCCGATCATGACAACGACCCAACTCCGGCTAATAGTAATGCCGGCGAAAACCATAATACCCATCAAGAGAAAAAGAAGAAAGAAGAGTTGGAAATAGGTAAAAAATCGCCATTTTTTCCGTTCTACAGTCCTAGCCCAGCACACTATCTCTTCTCGAAGAAATCTCCGGCGACGGGGAAATCTCCGGCGACTGGGAAATCCCCGGCGAGGTTCTTCAAGAGGCCGTTCCCGCCGCCGTCTCCGGCGAAGCACATCCGGTCGCTTCTGGCACGGCGGCATGGGTCTGTGAAGCCGAATGAGGCGGTGATACCGGAGGGGCAAGAGCCGGCGGAGGGTGGTGGTGGTGGGTTGGATAAGAATTTTGGGTTTTCCAAGAATTTTGGGAATAAGTATGAGATTGGGGAGGAAGTAGGGAGAGGGCATTTTGGTTATACTTGTAAGGCTAAGTTCAAGAAAGGTGAGCTTAAGGGACAAGAAGTTGCTGTTAAGGTCATACCTAAAGCTAAGTGGGTGTTGTTGATATTGACTAGATCTGCAGGTAACTTCTGTTTTCTGGATGCCAAAGGGATAGAGCCAAAAATTTCCATTTCCATTTCTTTTTTCCAAAGGAAAATGAAAGAAAAGGACAAGGTTGACTTTTATTCTATGACCACGGCTATAGCTATTGAGGATGTGAGAAGGGAGGTGAAAATTTTGAGAGCTTTGACAGGACATAACAATCTAGTACAATTTTATGATGCATTTGAAGACCATGAGAATGTGTACATTGTGATGGAAGGTGGCAGATACACGGAAGATGATGCCAAGGCTGTGATGGTACAAATATTGAAAGTTGTAGCATTTTGCCACCTTCAGGGTGTTGTACATCGGGATCTTAAGCCCGAGAATTTTTTGTTTACATCCAAGGATGAAGACTCGCAACTCAAGGCCATCGATTTTGGGTTGTCAGATTTTGTCAAGCCAGATGAGAAGCTAAATGACATAGTGGGCAGTGCGTATTATGTGGCACCTGAAGTTTTACATAGATCTTACAGTACAGAGGCTGATGTATGGAGTATTGGTGTAATAGCGTATATTTTATTATGTGGGAGCCGTCCATTTTGGGCTCGAACTGAGTCGGGGATATTTAGAGCCGTTTTAAAAGCGGATCCAAGTTTTGAGGAATTACCCTGGCCTTCTCTATCTTCTGAGGCGAAAGACTTTGTCAAACTTCTATTGAACAAAGACCCAAGGAAAAGAATGACTGCTGCTCAAGCCTTGAGTGAGTTTATATCATCTTTTGCGCTATCTAAAACGTTGACTGTGGATAAGCTGCTTTATTTGAAGGAGCAATTTGCTCTACTGGAACCAAGCAAAAACGGTACCATAAGCTTGGAAAATATCAAAGCGGCTTTGACGAAACATTCAACAGATGCCATGAAAGAGTTCCGTGTCCGTGATTTTTTGGCATCACTTTCAAGTGTAAACTATCTTAATCCTCTGTCATGGCAGCTTACTGCACTTCAATACAGAAGGATGGATTTTGAAGAATTCTGTGCAGCTGCATTAAGTGTACACCAACTTGAGGCTTTTGATCAATGGGAGCAACATGCTCGTTGTGCCTATGAACTTTTTGAGAAAGATGGAAATAGAGCCATTGTCATCGAGGAGTTGGCTTCTGAACTGAGCCTCGGCCCATCAGTCCCAGTTCACGCCGTGCTCCATGACTGGATTAGACACACTGATGGAAAGCTTAGCTTCCTCGGATTTGTCAAATTGTTGCATGGTGTCTCTAGCCGGTCTCTTGCTAAAGCCCATTAA

Network for GWHGAAZE023357

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	232	435	6.90E-53

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.732
	SRR3591706	second leaf	12.347
	SRR3591707	mature leaf	5.088
	SRR3591708	Shoot apex	20.165
	SRR3591709	Stem	9.980
	SRR3591710	White floral bud	3.519
	SRR3591711	White flower	2.215
	SRR3591712	Green floral bud	15.430
	SRR3591713	Yellow flower	1.505
SRP173429	SRR8316895	Juvenile bud stage	12.214
	SRR8316896	Juvenile bud stage	15.689
	SRR8316897	Juvenile bud stage	4.779
	SRR8316894	Third green stage	6.290
	SRR8316900	Third green stage	25.944
	SRR8316901	Third green stage	19.364
	SRR8316898	Complete white stage	4.039
	SRR8316899	Complete white stage	17.317
	SRR8316903	Complete white stage	5.597
	SRR8316902	Silver flowering stage	1.050
	SRR8316904	Silver flowering stage	1.439
	SRR8316905	Silver flowering stage	0.935
	SRR8316906	Gold flowering stage	2.128
	SRR8316907	Gold flowering stage	1.691
	SRR8316908	Gold flowering stage	1.874
SRP132670	SRR6706286	Control	31.113
	SRR6706287	Light intensity 50%	33.633
	SRR6706288	Light intensity 20%	35.128
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.578
	CNS0095593	Slightly white alabastrum(diploid) 2	7.658
	CNS0095594	Slightly white alabastrum(diploid) 3	4.864
	CNS0095595	Whole white alabastrum(diploid) 2	5.350
	CNS0095596	Whole white alabastrum(diploid) 3	6.134
	CNS0095597	Whole white alabastrum(diploid) 4	4.482
	CNS0095598	Silvery flower (diploied) 1	6.363
	CNS0095599	Silvery flower (diploied) 2	5.870
	CNS0095600	Silvery flower (diploied) 3	5.715
	CNS0095601	Golden flower (diploid) 1	4.950
	CNS0095602	Golden flower (diploid) 2	4.084
	CNS0095603	Golden flower (diploid) 3	5.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.412
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.652
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.934
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.040
	CNS0095610	Silvery flower (tetraploid) 1	2.902
	CNS0095611	Silvery flower (tetraploid) 2	4.702
	CNS0095612	Silvery flower (tetraploid) 3	2.980
	CNS0095613	Golden flower (tetraploid) 1	1.119
	CNS0095614	Golden flower (tetraploid) 2	3.547
	CNS0095615	Golden flower (tetraploid) 3	0.878
CRA001975	CRR073297	Stem 1	27.332
	CRR073298	Stem 2	23.214
	CRR073299	Stem 3	27.781
	CRR073300	Leaf 1	21.254
	CRR073301	Leaf 2	19.901
	CRR073302	Leaf 3	22.785
	CRR073303	Juvenile bud 1	18.260
	CRR073304	Juvenile bud 2	17.268
	CRR073305	Juvenile bud 3	23.427
	CRR073306	Third green 1	3.216
	CRR073307	Third green 2	2.275
	CRR073308	Third green 3	3.523
	CRR073309	Second white 1	2.197
	CRR073310	Second white 2	0.913
	CRR073311	Second white 3	1.250
	CRR073312	Silver flowering 1	0.739
	CRR073313	Silver flowering 2	0.836
	CRR073314	Silver flowering 3	0.872
	CRR073315	Gold flowering 1	11.093
	CRR073316	Gold flowering 2	15.539
	CRR073317	Gold flowering 3	11.440
	CRR073318	Tawny withering 1	23.708
	CRR073319	Tawny withering 2	13.821
	CRR073320	Tawny withering 3	28.273