Gene detail

Detail information of GWHGAAZE023346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P53681.1CRK_DAUCA	0	RecName: Full=CDPK-related protein kinase; AltName: Full=PK421 [Daucus carota]
COG	YP_003112167.1	0.000000001	serine/threonine protein kinase
Swissprot	tr\|P53681\|CRK_DAUCA	0	CDPK-related protein kinase
trEMBL	tr\|Q8W559\|Q8W559_TOBAC	0	Calcium/calmodulin-dependent protein kinase CaMK3 {ECO:0000313\|EMBL:AAL30820.1}
TAIR10	AT3G50530.1	0	CDPK-related kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	5938073	5945395	+
GWHAAZE00000007	mRNA	5938073	5945395	+
GWHAAZE00000007	exon	5938073	5938148	+
GWHAAZE00000007	exon	5938253	5938620	+
GWHAAZE00000007	exon	5939454	5939584	+
GWHAAZE00000007	exon	5939736	5939777	+
GWHAAZE00000007	exon	5939976	5940015	+
GWHAAZE00000007	exon	5940330	5940408	+
GWHAAZE00000007	exon	5940708	5940790	+
GWHAAZE00000007	exon	5940873	5941002	+
GWHAAZE00000007	exon	5942423	5942535	+
GWHAAZE00000007	exon	5942711	5942818	+
GWHAAZE00000007	exon	5942902	5942964	+
GWHAAZE00000007	exon	5943259	5943465	+
GWHAAZE00000007	exon	5945255	5945395	+
GWHAAZE00000007	CDS	5938073	5938148	+
GWHAAZE00000007	CDS	5938253	5938620	+
GWHAAZE00000007	CDS	5939454	5939584	+
GWHAAZE00000007	CDS	5939736	5939777	+
GWHAAZE00000007	CDS	5939976	5940015	+
GWHAAZE00000007	CDS	5940330	5940408	+
GWHAAZE00000007	CDS	5940708	5940790	+
GWHAAZE00000007	CDS	5940873	5941002	+
GWHAAZE00000007	CDS	5942423	5942535	+
GWHAAZE00000007	CDS	5942711	5942818	+
GWHAAZE00000007	CDS	5942902	5942964	+
GWHAAZE00000007	CDS	5943259	5943465	+
GWHAAZE00000007	CDS	5945255	5945395	+

Transcript Sequence
>GWHTAAZE023376 ATGGGTATTTGCACTTCCAAACCCTCCCCAGAACCTTATCTTTCCGATCATGACAACGACCCAACTCCGGCTAATACACACTATCTCTTCTCGAAGAAATCTCCGGCGACGGGGAAATCTCCGGCGACTGGGAAATCCCCGGCGAGGTTCTTCAAGAGGCCGTTCCCGCCGCCGTCTCCGGCGAAGCACATCCGGTCGCTTCTGGCACGGCGGCATGGGTCTGTGAAGCCGAATGAGGCGGCGATACCGGAGGGGCAAGAGCCGGCGGAGGGTGGTGGTGGTGGGTTGGATAAGAATTTTGGGTTTTCCAAGAATTTTGGGAATAAGTATGAGATTGGGGAGGAAGTAGGGAGAGGGCATTTTGGTTATACTTGTAAGGCTAAGTTCAAGAAAGGTGAGCTTAAGGGACAAGAAGTTGCTGTTAAGGTCATACCTAAAGCTAAGATGACCACGGCTATAGCTATTGAGGATGTGAGAAGGGAGGTGAAAATTTTGAGAGCTTTGACAGGACATAACAATCTAGTACAATTTTATGATGCATTTGAAGACCATGAGAATGTGTACATTGTGATGGAGTTATGCGAAGGAGGGGAGCTTTTGGATAGAATACTTTCAAGAGGTGGCAGATACACGGAAGATGATGCCAAGGCTGTGATGAATTTTTTGTTTACATCCAAGGATGAAGACTCGCAACTCAAGGCCATCGATTTTGGGTTGTCAGATTTTGTCAAGCCAGATGAGAAGCTAAATGACATAGTGGGCAGTGCGTATTATGTGGCACCTGAAGTTTTACATAGATCTTACAGTACAGAGGCTGATAGCCGTTTAAAAGCGGATCCAAGTTTTGAGGAATTACCCTGGCCTTCTCTATCTTCTGAGGCGAAAGACTTTGTCAAACTTCTATTGAACAAAGACCCAAGGAAAAGAATGACTGCTGCTCAAGCCTTGAGTCATCCATGGATTAGAATTAATAATGAAATAAAAGTCCCACTGGACATACTCATATTCAGACTCATGAAGGCTTATATGCGCTCATCTGCTCTCCGGAAAGCTGCTTTACGGGCGCTATCTAAAACGTTGACTGTGGATAAGCTGCTTTATTTGAAGGAGCAATTTGCTCTACTGGAACCAAGCAAAAACGGTACCATAAGCTTGGAAAATATCAAAGCGGCTTTGACGAAACATTCAACAGATGCCATGAAAGAGTCCCGTGTCCGTGATTTTTTGGCATCACTTTCAAGTGTAAACTATCTTAATCCTCTGTCATGGCAGCTTACTGCACTTCAATACAGAAGGATGGATTTTGAAGAATTCTGTGCAGCTGCATTAAGTGTACACCAACTTGAGGCTTTTGATCAATGGGAGCAACATGCTCGTTGTGCCTATGAACTTTTTGAGAAAGATGGAAATAGAGCCATTGTCATCGAGGAGTTGGCTTCTGAACTGAGCCTCGGCCCATCAGTCCCAGTTCACGCCGTGCTCCATGACTGGATTAGACACACTGATGGAAAGCTTAGCTTCCTCGGATTTGTCAAATTGTTGCATGGTGTCTCTAGCCGGTCTCTTGCTAAAGCCCATTAA

Network for GWHGAAZE023346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	110	220	5.50E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.574
	SRR3591706	second leaf	21.837
	SRR3591707	mature leaf	6.546
	SRR3591708	Shoot apex	34.004
	SRR3591709	Stem	20.147
	SRR3591710	White floral bud	7.728
	SRR3591711	White flower	4.328
	SRR3591712	Green floral bud	23.970
	SRR3591713	Yellow flower	1.998
SRP173429	SRR8316895	Juvenile bud stage	14.048
	SRR8316896	Juvenile bud stage	17.627
	SRR8316897	Juvenile bud stage	10.479
	SRR8316894	Third green stage	8.888
	SRR8316900	Third green stage	28.748
	SRR8316901	Third green stage	25.475
	SRR8316898	Complete white stage	4.749
	SRR8316899	Complete white stage	18.496
	SRR8316903	Complete white stage	6.609
	SRR8316902	Silver flowering stage	1.191
	SRR8316904	Silver flowering stage	1.849
	SRR8316905	Silver flowering stage	0.848
	SRR8316906	Gold flowering stage	2.546
	SRR8316907	Gold flowering stage	2.040
	SRR8316908	Gold flowering stage	3.283
SRP132670	SRR6706286	Control	18.428
	SRR6706287	Light intensity 50%	21.650
	SRR6706288	Light intensity 20%	22.605
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.254
	CNS0095593	Slightly white alabastrum(diploid) 2	8.812
	CNS0095594	Slightly white alabastrum(diploid) 3	8.093
	CNS0095595	Whole white alabastrum(diploid) 2	7.518
	CNS0095596	Whole white alabastrum(diploid) 3	6.947
	CNS0095597	Whole white alabastrum(diploid) 4	7.244
	CNS0095598	Silvery flower (diploied) 1	7.434
	CNS0095599	Silvery flower (diploied) 2	6.833
	CNS0095600	Silvery flower (diploied) 3	4.908
	CNS0095601	Golden flower (diploid) 1	5.163
	CNS0095602	Golden flower (diploid) 2	4.789
	CNS0095603	Golden flower (diploid) 3	4.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.598
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.410
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.018
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.849
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.628
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.300
	CNS0095610	Silvery flower (tetraploid) 1	5.342
	CNS0095611	Silvery flower (tetraploid) 2	5.343
	CNS0095612	Silvery flower (tetraploid) 3	3.891
	CNS0095613	Golden flower (tetraploid) 1	1.719
	CNS0095614	Golden flower (tetraploid) 2	4.832
	CNS0095615	Golden flower (tetraploid) 3	0.800
CRA001975	CRR073297	Stem 1	29.860
	CRR073298	Stem 2	28.370
	CRR073299	Stem 3	30.084
	CRR073300	Leaf 1	28.025
	CRR073301	Leaf 2	24.451
	CRR073302	Leaf 3	24.651
	CRR073303	Juvenile bud 1	20.635
	CRR073304	Juvenile bud 2	18.204
	CRR073305	Juvenile bud 3	22.311
	CRR073306	Third green 1	4.207
	CRR073307	Third green 2	2.854
	CRR073308	Third green 3	3.298
	CRR073309	Second white 1	1.874
	CRR073310	Second white 2	0.934
	CRR073311	Second white 3	0.420
	CRR073312	Silver flowering 1	0.932
	CRR073313	Silver flowering 2	0.966
	CRR073314	Silver flowering 3	1.212
	CRR073315	Gold flowering 1	12.935
	CRR073316	Gold flowering 2	17.883
	CRR073317	Gold flowering 3	11.727
	CRR073318	Tawny withering 1	25.932
	CRR073319	Tawny withering 2	20.137
	CRR073320	Tawny withering 3	31.906