Gene detail

Detail information of GWHGAAZE023311

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635532.1	3.4379E-66	PREDICTED: uncharacterized protein LOC100854002 [Vitis vinifera]
trEMBL	tr\|F6HJU4\|F6HJU4_VITVI	9E-67	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB54197.1} (Fragment)
TAIR10	AT5G66860.1	1E-43	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	4968924	4969866	+
GWHAAZE00000007	mRNA	4968924	4969866	+
GWHAAZE00000007	exon	4968924	4969283	+
GWHAAZE00000007	exon	4969681	4969866	+
GWHAAZE00000007	CDS	4968924	4969283	+
GWHAAZE00000007	CDS	4969681	4969866	+

Transcript Sequence
>GWHTAAZE023341 ATGTCGAAGCTCTGGACCACCGCCGGCGCCAGCCTCAGGCGAGCGGCGGAGAGGTGTAGAACCTACCACACTATTCAAGCGATTCCGAGAGAGATCACCGGAAGCAGAGTCTCCGCAAAGGACAGAAACCAAGGCCGAATACCGGCCGTTGTTTTGACGCAAAACTTCGTCGAATCAAAAACTAGCGATGGTCGTACCATCACTAGCTGCTCAATCTCGAAGAAATTTCTAATCACTACTGAGAAAAAGCAGATTCAGTCCATTCTCGACTCGGTTCAACCCCGGTTCTTCTGCTCCACTACTTTTCCCCTTCAGATCCGAGCCGGTTCCGGTTCCTCTGTTCTCCTTCAATCCGCAAAAGTTCATAGAGATGAAAATACGGGGAAGATTCTCAATTTGGTATTTGCTTGGGTCGATGAAGGGAAGGATTTGAGAGTTGATGTGCCTATTGTGTTGAAAGGCGAAGATATTTGTCCTGGTCTGAAGAAAGGTTTGTGTTGTAATTTCTCTTACATGCCTTATTTGTTCTATGTGCTTGCATTTTGA

Network for GWHGAAZE023311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02897	RP-L25, rplY	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.804
	SRR3591706	second leaf	3.311
	SRR3591707	mature leaf	3.669
	SRR3591708	Shoot apex	9.629
	SRR3591709	Stem	6.046
	SRR3591710	White floral bud	4.938
	SRR3591711	White flower	4.164
	SRR3591712	Green floral bud	5.885
	SRR3591713	Yellow flower	3.416
SRP173429	SRR8316895	Juvenile bud stage	8.391
	SRR8316896	Juvenile bud stage	12.341
	SRR8316897	Juvenile bud stage	6.796
	SRR8316894	Third green stage	6.481
	SRR8316900	Third green stage	17.034
	SRR8316901	Third green stage	16.273
	SRR8316898	Complete white stage	4.440
	SRR8316899	Complete white stage	17.431
	SRR8316903	Complete white stage	7.309
	SRR8316902	Silver flowering stage	6.160
	SRR8316904	Silver flowering stage	5.394
	SRR8316905	Silver flowering stage	2.727
	SRR8316906	Gold flowering stage	9.160
	SRR8316907	Gold flowering stage	4.745
	SRR8316908	Gold flowering stage	8.221
SRP132670	SRR6706286	Control	15.828
	SRR6706287	Light intensity 50%	15.525
	SRR6706288	Light intensity 20%	18.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.652
	CNS0095593	Slightly white alabastrum(diploid) 2	8.953
	CNS0095594	Slightly white alabastrum(diploid) 3	12.695
	CNS0095595	Whole white alabastrum(diploid) 2	12.648
	CNS0095596	Whole white alabastrum(diploid) 3	10.726
	CNS0095597	Whole white alabastrum(diploid) 4	9.255
	CNS0095598	Silvery flower (diploied) 1	5.597
	CNS0095599	Silvery flower (diploied) 2	5.268
	CNS0095600	Silvery flower (diploied) 3	6.130
	CNS0095601	Golden flower (diploid) 1	3.966
	CNS0095602	Golden flower (diploid) 2	7.450
	CNS0095603	Golden flower (diploid) 3	7.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.193
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.547
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.597
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.912
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.652
	CNS0095610	Silvery flower (tetraploid) 1	17.507
	CNS0095611	Silvery flower (tetraploid) 2	21.664
	CNS0095612	Silvery flower (tetraploid) 3	17.951
	CNS0095613	Golden flower (tetraploid) 1	9.380
	CNS0095614	Golden flower (tetraploid) 2	13.118
	CNS0095615	Golden flower (tetraploid) 3	11.170
CRA001975	CRR073297	Stem 1	15.386
	CRR073298	Stem 2	16.887
	CRR073299	Stem 3	21.981
	CRR073300	Leaf 1	20.873
	CRR073301	Leaf 2	18.597
	CRR073302	Leaf 3	20.213
	CRR073303	Juvenile bud 1	27.142
	CRR073304	Juvenile bud 2	19.339
	CRR073305	Juvenile bud 3	11.875
	CRR073306	Third green 1	7.451
	CRR073307	Third green 2	5.173
	CRR073308	Third green 3	4.921
	CRR073309	Second white 1	9.330
	CRR073310	Second white 2	10.494
	CRR073311	Second white 3	5.449
	CRR073312	Silver flowering 1	3.615
	CRR073313	Silver flowering 2	5.828
	CRR073314	Silver flowering 3	3.860
	CRR073315	Gold flowering 1	9.624
	CRR073316	Gold flowering 2	15.023
	CRR073317	Gold flowering 3	8.370
	CRR073318	Tawny withering 1	10.984
	CRR073319	Tawny withering 2	13.086
	CRR073320	Tawny withering 3	14.685