Detail information of GWHGAAZE023208


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656670.11.70263E-54PREDICTED: B3 domain-containing transcription factor VRN1-like [Vitis vinifera]
Swissprottr|Q8L3W1|VRN1_ARATH8E-38B3 domain-containing transcription factor VRN1
trEMBLtr|A0A061DG54|A0A061DG54_THECC9E-59AP2/B3-like transcriptional factor family protein, putative {ECO:0000313|EMBL:EOX91270.1}
TAIR10AT3G18990.14E-33AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene16557811657255-
GWHAAZE00000007mRNA16557811657255-
GWHAAZE00000007exon16557811655816-
GWHAAZE00000007exon16559051656096-
GWHAAZE00000007exon16561971656357-
GWHAAZE00000007exon16567171657089-
GWHAAZE00000007exon16571751657255-
GWHAAZE00000007CDS16571751657255-
GWHAAZE00000007CDS16567171657089-
GWHAAZE00000007CDS16561971656357-
GWHAAZE00000007CDS16559051656096-
GWHAAZE00000007CDS16557811655816-
Transcript Sequence

Network for GWHGAAZE023208

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0080Transcription factor B3 family Transcription factor B3
map04130 SNARE interactions in vesicular transport
map04138 Autophagy - yeast
GO:0016192 vesicle-mediated transport GOslim:biological_process
GO:0006886 intracellular protein transport GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3131032.00E-13
PF02362.22B31912721.20E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.191
SRR3591706second leaf2.055
SRR3591707mature leaf1.517
SRR3591708Shoot apex3.814
SRR3591709Stem1.362
SRR3591710White floral bud18.809
SRR3591711White flower28.696
SRR3591712Green floral bud2.923
SRR3591713Yellow flower75.865
SRP173429 SRR8316895Juvenile bud stage 1.826
SRR8316896Juvenile bud stage 2.080
SRR8316897Juvenile bud stage 2.345
SRR8316894Third green stage 1.081
SRR8316900Third green stage 2.932
SRR8316901Third green stage 2.613
SRR8316898Complete white stage 1.719
SRR8316899Complete white stage 5.693
SRR8316903Complete white stage 2.665
SRR8316902Silver flowering stage1.821
SRR8316904Silver flowering stage2.408
SRR8316905Silver flowering stage1.175
SRR8316906Gold flowering stage 10.565
SRR8316907Gold flowering stage 7.330
SRR8316908Gold flowering stage 48.388
SRP132670SRR6706286Control1.293
SRR6706287Light intensity 50%1.490
SRR6706288Light intensity 20%1.511
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.023
CNS0095593Slightly white alabastrum(diploid) 23.046
CNS0095594Slightly white alabastrum(diploid) 32.634
CNS0095595Whole white alabastrum(diploid) 24.431
CNS0095596Whole white alabastrum(diploid) 34.135
CNS0095597Whole white alabastrum(diploid) 42.941
CNS0095598Silvery flower (diploied) 14.125
CNS0095599Silvery flower (diploied) 23.248
CNS0095600Silvery flower (diploied) 32.384
CNS0095601Golden flower (diploid) 16.231
CNS0095602Golden flower (diploid) 22.043
CNS0095603Golden flower (diploid) 32.501
CNS0095604Slightly white alabastrum(tetraploid) 12.236
CNS0095605Slightly white alabastrum(tetraploid) 22.492
CNS0095606Slightly white alabastrum(tetraploid) 32.889
CNS0095607Whole white alabastrum(tetraploid) 12.084
CNS0095608Whole white alabastrum(tetraploid) 22.383
CNS0095609Whole white alabastrum(tetraploid) 32.556
CNS0095610Silvery flower (tetraploid) 18.711
CNS0095611Silvery flower (tetraploid) 26.809
CNS0095612Silvery flower (tetraploid) 379.947
CNS0095613Golden flower (tetraploid) 145.743
CNS0095614Golden flower (tetraploid) 216.634
CNS0095615Golden flower (tetraploid) 333.993
CRA001975CRR073297Stem 11.254
CRR073298Stem 21.471
CRR073299Stem 31.746
CRR073300Leaf 12.774
CRR073301Leaf 21.647
CRR073302Leaf 30.987
CRR073303Juvenile bud 10.996
CRR073304Juvenile bud 20.569
CRR073305Juvenile bud 30.557
CRR073306Third green 12.018
CRR073307Third green 21.246
CRR073308Third green 31.084
CRR073309Second white 11.498
CRR073310Second white 26.109
CRR073311Second white 35.106
CRR073312Silver flowering 16.334
CRR073313Silver flowering 22.759
CRR073314Silver flowering 34.803
CRR073315Gold flowering 10.250
CRR073316Gold flowering 20.746
CRR073317Gold flowering 30.037
CRR073318Tawny withering 11.296
CRR073319Tawny withering 20.696
CRR073320Tawny withering 30.947