Gene detail

Detail information of GWHGAAZE023194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002310188.1	0	O2 evolving complex 33kD family protein [Populus trichocarpa]
Swissprot	tr\|P26320\|PSBO_SOLTU	0	Oxygen-evolving enhancer protein 1, chloroplastic (Precursor)
trEMBL	tr\|A9PJ90\|A9PJ90_9ROSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ABK96443.1}
TAIR10	AT3G50820.1	2E-157	photosystem II subunit O-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1444238	1445347	-
GWHAAZE00000007	mRNA	1444238	1445347	-
GWHAAZE00000007	exon	1444238	1444996	-
GWHAAZE00000007	exon	1445099	1445347	-
GWHAAZE00000007	CDS	1445099	1445347	-
GWHAAZE00000007	CDS	1444238	1444996	-

Transcript Sequence
>GWHTAAZE023224 ATGGCAGCCTCACTACAAGCTGCAGCCACACTCATGCAACCCAATAAACTAGGGGTCCAGCCCCGAACCACCATCACTGGTCTACAGCTCAGGTCTTCCCAAAGTATATCCAAGTCCTTCGGCTTTGAACATGGAGCCAGCAGGATCACCTGCTCACTGCAGTCTGACTTTAAGGATTTCACTCAAAAGTGCGCTGATGCAGCCAAGGTTGCTGGCTTTGCTCTTGCCACCTCCGCCCTTGTCGTCTCGGGAGCAAGTGCTGAAGGACCTCCTAAAAGGCTAACTTACGATGAAATCCAAAGCAAGACATACCTAGAGGTGAAGGGAACCGGGACTGCTAACCAGTGCCCAACCATTGACGGTGGAGTCGACAAATTTGCCTTCAAGCCTGGCAAATACAGTGCCAAGAAGTTGTGCCTCGAACCCACATCCTTCACTGTTAAAGCCGAGGGTGTGAGCAAGAACGCCCCACCTGAGTTCCAAAAAACCAAGCTCATGACCCGCTTAACCTACACCCTTGATGAGATCGAAGGACCCCTCGAAGTGGCCCCAGACGGAAACCTCAAGTTCGAGGAGAAAGATGGAATTGATTATGCGGCCGTTACGGTCCAGCTACCTGGTGGCGAGCGTGTGCCGTTCCTCTTCACCATCAAACAGCTTGTAGCGTCTGGTAAACCAGAGAGCTTCTCGGGTGACTTTCTTGTGCCGTCTTATAGGGGTTCATCTTTCCTTGACCCAAAGGGTCGGGGTGGGTCGACCGGCTACGACAATGCGGTTGCTTTGCCAGCCGGAGGGAGAGGAGATGAAGAGGAGCTCTCCAAGGAGAATATAAAGAATACTGCTTCTTCCACCGGGAAAATCACCTTGAGTGTAACCAAAAGCAAGCCGGAGACTGGAGAGGTGATTGGAGTATTTGAAAGCATTCAACCATCTGATACTGATTTGGGGGCAAAGACTCCTAAGGAAGTGAAAATCCAAGGGGTTTGGTACGCTCAAATTGAATCGTAG

Network for GWHGAAZE023194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01716.19	MSP	101	333	4.00E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02716	psbO	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0010207	biological_process	photosystem II assembly
GO:0042549	biological_process	photosystem II stabilization
GO:0009654	cellular_component	photosystem II oxygen evolving complex
GO:0010242	molecular_function	oxygen evolving activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	725.681
	SRR3591706	second leaf	3209.818
	SRR3591707	mature leaf	2938.892
	SRR3591708	Shoot apex	1269.622
	SRR3591709	Stem	473.821
	SRR3591710	White floral bud	255.966
	SRR3591711	White flower	194.929
	SRR3591712	Green floral bud	92.572
	SRR3591713	Yellow flower	87.351
SRP173429	SRR8316895	Juvenile bud stage	304.501
	SRR8316896	Juvenile bud stage	226.514
	SRR8316897	Juvenile bud stage	211.745
	SRR8316894	Third green stage	95.804
	SRR8316900	Third green stage	223.192
	SRR8316901	Third green stage	183.145
	SRR8316898	Complete white stage	110.557
	SRR8316899	Complete white stage	119.039
	SRR8316903	Complete white stage	192.211
	SRR8316902	Silver flowering stage	119.588
	SRR8316904	Silver flowering stage	155.867
	SRR8316905	Silver flowering stage	105.202
	SRR8316906	Gold flowering stage	217.849
	SRR8316907	Gold flowering stage	227.414
	SRR8316908	Gold flowering stage	167.895
SRP132670	SRR6706286	Control	348.148
	SRR6706287	Light intensity 50%	261.979
	SRR6706288	Light intensity 20%	246.707
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	220.862
	CNS0095593	Slightly white alabastrum(diploid) 2	142.059
	CNS0095594	Slightly white alabastrum(diploid) 3	155.455
	CNS0095595	Whole white alabastrum(diploid) 2	111.241
	CNS0095596	Whole white alabastrum(diploid) 3	142.223
	CNS0095597	Whole white alabastrum(diploid) 4	99.490
	CNS0095598	Silvery flower (diploied) 1	548.602
	CNS0095599	Silvery flower (diploied) 2	524.402
	CNS0095600	Silvery flower (diploied) 3	597.045
	CNS0095601	Golden flower (diploid) 1	574.555
	CNS0095602	Golden flower (diploid) 2	581.807
	CNS0095603	Golden flower (diploid) 3	581.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	231.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	257.365
	CNS0095606	Slightly white alabastrum(tetraploid) 3	314.545
	CNS0095607	Whole white alabastrum(tetraploid) 1	111.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	111.355
	CNS0095609	Whole white alabastrum(tetraploid) 3	204.002
	CNS0095610	Silvery flower (tetraploid) 1	524.135
	CNS0095611	Silvery flower (tetraploid) 2	958.340
	CNS0095612	Silvery flower (tetraploid) 3	568.204
	CNS0095613	Golden flower (tetraploid) 1	382.468
	CNS0095614	Golden flower (tetraploid) 2	544.720
	CNS0095615	Golden flower (tetraploid) 3	897.364
CRA001975	CRR073297	Stem 1	675.441
	CRR073298	Stem 2	577.292
	CRR073299	Stem 3	1056.818
	CRR073300	Leaf 1	169.780
	CRR073301	Leaf 2	232.109
	CRR073302	Leaf 3	251.222
	CRR073303	Juvenile bud 1	177.010
	CRR073304	Juvenile bud 2	158.582
	CRR073305	Juvenile bud 3	305.426
	CRR073306	Third green 1	124.332
	CRR073307	Third green 2	164.232
	CRR073308	Third green 3	135.069
	CRR073309	Second white 1	505.871
	CRR073310	Second white 2	235.863
	CRR073311	Second white 3	215.286
	CRR073312	Silver flowering 1	163.285
	CRR073313	Silver flowering 2	153.301
	CRR073314	Silver flowering 3	141.068
	CRR073315	Gold flowering 1	4323.647
	CRR073316	Gold flowering 2	3803.347
	CRR073317	Gold flowering 3	4566.571
	CRR073318	Tawny withering 1	459.786
	CRR073319	Tawny withering 2	325.575
	CRR073320	Tawny withering 3	377.605