Gene detail

Detail information of GWHGAAZE023185

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762806.1	0	PREDICTED: protein LYK5-like [Nicotiana sylvestris]
COG	YP_002524068.1	2E-20	serine/threonine-protein kinase PksC
Swissprot	tr\|O64825\|LYK4_ARATH	3E-111	LysM domain receptor-like kinase 4 (Precursor)
trEMBL	tr\|K4BCE3\|K4BCE3_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g089920.1.1}
TAIR10	AT2G23770.1	5E-92	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1344842	1346782	+
GWHAAZE00000007	mRNA	1344842	1346782	+
GWHAAZE00000007	exon	1344842	1346782	+
GWHAAZE00000007	CDS	1344842	1346782	+

Transcript Sequence
>GWHTAAZE023215 ATGCATCTTAAACAACAAGTGCAGCTTCAAGAGTCTCATCTTTCAACTCAACTTCTGTTAAAGAAAAATCCCACCATGAATCACTTTCCGCTCTGTTTGTTCATAATTCTCGCCTTTTTGGCTTTGGGTTTCAATTCCCAACAGTTGTATTCAGGGACCTCGGTTCTAGACTGCAATGGCACTGATGAAGCGGGCCCCTCCCCAGATTTTCTCTACACCTGCAACAGCGAAAAAAAGTCCTGCCAAGCCTTCTTGATCTTCAGATCACAGTCTCCTTATGATTCACTGGTTACCATTTCGAACCTCACGTCTTCAGACCTCACAAAACTCACACATGTGAACAACATTGCGTCTAACATGCTTCTGCCTCAGTACAAAGAGGTGATTGTACCTGTAACATGTTCTTGTTCAGGTCAGTACTATCAAGCCAACACTTCTTATGTTGTTGAGACTGGTGATAACTATTTCACCATCGCATTTAATACTTACCAGGGGCTTTCCACTTGTGATTCCCTAATGAAAGAGAATATTTACAGCAAATTCAACTTGATTCCTGGTTCGAGATTGAGGGTCCCACTTAGGTGTGCCTGTCCTACTAGTAACCAAATCTTGAATGGTACAAAGTTTTTACTCACATACTTGGCTATGGATGATGATTCAGTTCTGAAAATCAGTGAGAGTTTTAATGTTAGTAGTCAAAGTGTAGCTTTTGCAAATGGGTTTCTTGAAGAAGACTCAAGTATTGATCCCCGTACAACTCTTCTAATTCCACTGCCAGATGAACCTTTGAGCTCACAAACCAAGATTCATCCTCCATCGGTTGTTTCTTCTCCTCCAACTCATCGAAATCCAAACAGAAATTCAAAAAAAGGACTTCTGATTGGGATCGGGGCTGGATTTTTGCTCGCGGTTCTCTGTTCTCTGCTGTTTGTGGTCTTTTTCCGCCCCCGGTGGAAAAAATTGTATGAGCTTGCTCCGAAGAAGAGAGAGAGGAAAAGGAAATGGGTTCTGCCTGAACATCTCCAAGTTGCCATTGCCAGTGTTGATCAAATATTGAAAGTTTACGAATTTGAAGAACTAGAGGCGGCTACTGAAAACTTCAGTCTTCGAAACAAATTAAGTGCTTCTGTTTATCGTGGTGTTCTTCGTGAGAAAGTTGTAGCTATTAAAAAGATGAGCTTGAATATAGCAAAAGAGGTGAAAATTCTCAACAAGATCAACCACTTCAATCTCATCAGCCTATACGGTGCTTGTGAAAATCAAGGGGTATTTTACCTCGTTTACGAGTTCATGGAAGTTGGTTCTTTAAAGGAATGGCTTATCAAAGAGAGTGATCTAGAAATTCGGGGTTGGAACTTTAGGATTCAAATTGCTTTGGATATTGCTAAAGGGCTTCACTACATTCATAACTTCACAAATCCAGCATATGTGCACAAGGGCATAAATAGTAGCAATGTTTTATTGAACAGAGAATTAAGGGCCAAGATTGCAAACTTCAGCCTGGCAAAGTCATCAGAGAGGGACGAAAATGGAACTTCATCTACACGGTGTGATCTCGGGGCCAAAGGGTACATGGCACCTGAATACCTAGAATCTTGCGAGGTGACAACAAAGATGGATGTTTATGCTTTCGGGATTGTACTTTTGGAGCTGATTACGGGCAAAGAAGCTGTTTTCAAGCAGGACGGAGAAGAAGTAATGCTATCAGAAGTGGTACTTTCAAGTGAAGCTGAGCTTAGCTATCTTGTCGATCCACGGCTGCAAGTGAAGCACGCGCTGGGTTACATAATTGATCGAACCGGGCTGGTAATACGAATGATGAAACTAAGTATTGCCTGTTTGGAATTGGAGCCTTCAAGAAGGTTAAGCATGGAGGAAGTGGTTTCCACTCTAATGAAGATTCAGATAGATGCACAGGAATCAGAATCCTTGTCGATGTAG

Network for GWHGAAZE023185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0132	Protein Kinases RLK-Pelle_LysM family Protein Kinases RLK-Pelle_LysM

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	387	566	7.30E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.152
	SRR3591706	second leaf	0.096
	SRR3591707	mature leaf	0.054
	SRR3591708	Shoot apex	0.074
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.051
	SRR3591712	Green floral bud	0.042
	SRR3591713	Yellow flower	0.234
SRP173429	SRR8316895	Juvenile bud stage	0.502
	SRR8316896	Juvenile bud stage	0.421
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.275
	SRR8316901	Third green stage	0.521
	SRR8316898	Complete white stage	0.057
	SRR8316899	Complete white stage	1.018
	SRR8316903	Complete white stage	0.397
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.095
	SRR8316905	Silver flowering stage	0.044
	SRR8316906	Gold flowering stage	0.206
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.148
SRP132670	SRR6706286	Control	0.126
	SRR6706287	Light intensity 50%	0.123
	SRR6706288	Light intensity 20%	0.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.136
	CNS0095593	Slightly white alabastrum(diploid) 2	0.214
	CNS0095594	Slightly white alabastrum(diploid) 3	0.214
	CNS0095595	Whole white alabastrum(diploid) 2	0.227
	CNS0095596	Whole white alabastrum(diploid) 3	0.061
	CNS0095597	Whole white alabastrum(diploid) 4	0.447
	CNS0095598	Silvery flower (diploied) 1	0.028
	CNS0095599	Silvery flower (diploied) 2	0.151
	CNS0095600	Silvery flower (diploied) 3	0.255
	CNS0095601	Golden flower (diploid) 1	0.224
	CNS0095602	Golden flower (diploid) 2	0.402
	CNS0095603	Golden flower (diploid) 3	0.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.026
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.294
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.001
	CNS0095612	Silvery flower (tetraploid) 3	0.094
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.078
	CNS0095615	Golden flower (tetraploid) 3	0.169
CRA001975	CRR073297	Stem 1	0.123
	CRR073298	Stem 2	0.138
	CRR073299	Stem 3	0.108
	CRR073300	Leaf 1	0.540
	CRR073301	Leaf 2	0.404
	CRR073302	Leaf 3	0.200
	CRR073303	Juvenile bud 1	0.969
	CRR073304	Juvenile bud 2	4.092
	CRR073305	Juvenile bud 3	0.347
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.028
	CRR073310	Second white 2	0.296
	CRR073311	Second white 3	0.181
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.267
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.495
	CRR073316	Gold flowering 2	0.334
	CRR073317	Gold flowering 3	0.087
	CRR073318	Tawny withering 1	0.368
	CRR073319	Tawny withering 2	0.177
	CRR073320	Tawny withering 3	0.000