Gene detail

Detail information of GWHGAAZE023184

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099273.1	0	PREDICTED: lysM domain receptor-like kinase 4 [Sesamum indicum]
COG	YP_006915967.1	4E-22	PASTA sensor-containing serine/threonine protein kinase
Swissprot	tr\|O64825\|LYK4_ARATH	2E-174	LysM domain receptor-like kinase 4 (Precursor)
trEMBL	tr\|A0A068U1L9\|A0A068U1L9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02416.1}
TAIR10	AT2G23770.1	9E-134	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1342164	1344059	+
GWHAAZE00000007	mRNA	1342164	1344059	+
GWHAAZE00000007	exon	1342164	1344059	+
GWHAAZE00000007	CDS	1342164	1344059	+

Transcript Sequence
>GWHTAAZE023214 ATGAGTTTTTGTCATTTAATCTCCGTTTTTCCTATCTTTCTAATCACTTATTCTTCTTTGATTCAAGCCCAGCAGCCTTACGTTGGACGGGCCACAACTCTCTGTGACACCACAACAGATAACTCAAATTCAATTCTTGGCTACGTCTATAATGGCAGAAACCCTAGTTGCCAAGCTTATCTCACCTTCAGATCTCAACCATCCAGATTCAATTCTGTCTCTTCAATCTCAGCCCTTCTTTCTGTTGACCCATCTCAGCTCTCTCAGCTCAATTCAGTTCCTTTAGATGCAAATTTCGAAGCAAACAAGCTGGTTCTTGTTCCAATAAACTGTTCTCGTTCAGGTGAGTACTATCAATATAATGCCTCGTATGTAATTCAGGCTGGTGATGGCTATTTCTTGATTGCAAATAATACTTTTCAAGGCCTCTCTACTTGTAATGCTCTTCAATTGCAGAATCAAATTCCTGCAACAAATTTAGAAATTGGGACTAGGATTGTTGTGCCTTTGAGATGCGCTTGTCCAACCCAAAACCAGAGTGATTCGGGGGTGAATTATTTGTTGAGTTATATAGTCAATTTTGGCCAAACTGGCGCTATCATAAGTTCAACTTTTGGGGTTGATTATGGAAGGACTCTTGAAGCTAATAGTTTATCTGAACAAAGTATAATTAACCCCTTCACCACCCTCCTTGTTCCCCTCCGAGACCCGCCCACAAGTTCTCAAACCCTAGAACCACCGCCGCCGCCAGCATCACCACCACCTCCGCCGCAGTCAACCACCCCTTCGTCCAATTCAAGCTCAAATAAAACATGGATTTTTGTTTTGGTAGGGGTTCTTGGTGGGCTTGCTCTTTTATCTGTCATTGGGGCCACTGCTTTCTTCTTGTTCTTTAGGAAAAGTAAGAAGAAAAATGACCCACTTGTTGTCTCAGAGAGCTTCGAGGCATATGAGAAAGGGAAACCAACCGAGAAGAATTTGGAAGATGAATCCCAATTCTTGGAAGACATATCTAGTATAGCTCAATCGCTCAAAGTGTATACTTTCGAGGAGCTTCAAACCGCAACGGAAAATTTCAGCCCTAGTTGTTGTATTAAGGATTCTGTTTATCGCGGTACAATTAATGGAGACTTTGCTGCTATCAAGAAAATGAATGGAGATGTATCTGAGGAATTGAATTTACTAAACAAGATCAATCACTTTAATCTTATACGCCTATCGGGCGTTTGTTTCAAAGAGGGGAATTGGTACCTTGTTTATGAGTATGCTGTCAATGGACCCTTGAGTGATTGGATCTATTCCAAGAAACCTGAACAAAATTTCTTGAATTGGACACAGAGAATACAGATTGCTTTAGATGTTGCCAATGGGATTAATTATCTCCATAGCTACACTTCCCCTCCTTGTGTCCACAAGGATTTGAAGGCAAGTAATATTCTTCTTGATAGTGATTTCAGGGCAAAAATTACTAACTTCAATCTAGCAAGGTCAGCAGATGGGCATGATGGTCAATTTGCATTGACAAGGCACATAATTGGGACAAAGGGTTACATGGCTCCTGAGTATTTGGAGAACGGTTTGATCTCCCCAAAGCTTGATGTTTATTCGTTCGGGGTTCTTATACTGGAGATTCTTACTGGGCAAACAGTTGAAGTTTTGTACAAAGAGGAAAATACGGACTTATCTGAGGTGTTAGGTAATATGATTCGGGATGAAAATGTAATGGAGAATTTGAGCAAATTTATGGATCCTTCTTTGAAAGGAAACTACTCTCCGGAACTTGCCTTATTTGTGGTGGCACTTGTTGCTCGCTGCTTAAAGAAAGATCCATTGGGCCGTCCGGATATGAATGAGATTGAGCAGAGTCTTTCAAGAACTTTGAATACAAAACTTTGA

Network for GWHGAAZE023184

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01476.21	LysM	190	233	0.18
PF00069.26	Pkinase	382	621	7.50E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.314
	SRR3591706	second leaf	5.435
	SRR3591707	mature leaf	4.529
	SRR3591708	Shoot apex	6.060
	SRR3591709	Stem	11.588
	SRR3591710	White floral bud	10.094
	SRR3591711	White flower	20.496
	SRR3591712	Green floral bud	5.793
	SRR3591713	Yellow flower	14.788
SRP173429	SRR8316895	Juvenile bud stage	6.565
	SRR8316896	Juvenile bud stage	4.836
	SRR8316897	Juvenile bud stage	4.311
	SRR8316894	Third green stage	2.828
	SRR8316900	Third green stage	3.900
	SRR8316901	Third green stage	4.832
	SRR8316898	Complete white stage	0.263
	SRR8316899	Complete white stage	9.597
	SRR8316903	Complete white stage	1.927
	SRR8316902	Silver flowering stage	5.191
	SRR8316904	Silver flowering stage	5.379
	SRR8316905	Silver flowering stage	2.801
	SRR8316906	Gold flowering stage	11.903
	SRR8316907	Gold flowering stage	10.512
	SRR8316908	Gold flowering stage	18.302
SRP132670	SRR6706286	Control	3.669
	SRR6706287	Light intensity 50%	3.022
	SRR6706288	Light intensity 20%	2.325
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.836
	CNS0095593	Slightly white alabastrum(diploid) 2	6.726
	CNS0095594	Slightly white alabastrum(diploid) 3	4.112
	CNS0095595	Whole white alabastrum(diploid) 2	3.491
	CNS0095596	Whole white alabastrum(diploid) 3	1.040
	CNS0095597	Whole white alabastrum(diploid) 4	2.175
	CNS0095598	Silvery flower (diploied) 1	11.984
	CNS0095599	Silvery flower (diploied) 2	6.952
	CNS0095600	Silvery flower (diploied) 3	11.356
	CNS0095601	Golden flower (diploid) 1	9.442
	CNS0095602	Golden flower (diploid) 2	13.935
	CNS0095603	Golden flower (diploid) 3	13.125
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.596
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.686
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.402
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.599
	CNS0095610	Silvery flower (tetraploid) 1	4.647
	CNS0095611	Silvery flower (tetraploid) 2	2.711
	CNS0095612	Silvery flower (tetraploid) 3	5.544
	CNS0095613	Golden flower (tetraploid) 1	3.930
	CNS0095614	Golden flower (tetraploid) 2	4.982
	CNS0095615	Golden flower (tetraploid) 3	4.051
CRA001975	CRR073297	Stem 1	2.596
	CRR073298	Stem 2	1.659
	CRR073299	Stem 3	1.740
	CRR073300	Leaf 1	2.280
	CRR073301	Leaf 2	2.563
	CRR073302	Leaf 3	1.287
	CRR073303	Juvenile bud 1	1.185
	CRR073304	Juvenile bud 2	2.219
	CRR073305	Juvenile bud 3	3.358
	CRR073306	Third green 1	3.534
	CRR073307	Third green 2	3.484
	CRR073308	Third green 3	3.885
	CRR073309	Second white 1	5.886
	CRR073310	Second white 2	4.198
	CRR073311	Second white 3	5.412
	CRR073312	Silver flowering 1	14.568
	CRR073313	Silver flowering 2	10.683
	CRR073314	Silver flowering 3	9.287
	CRR073315	Gold flowering 1	5.072
	CRR073316	Gold flowering 2	5.185
	CRR073317	Gold flowering 3	5.671
	CRR073318	Tawny withering 1	1.963
	CRR073319	Tawny withering 2	5.490
	CRR073320	Tawny withering 3	1.823