Detail information of GWHGAAZE023183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010099355.14.5827E-111RING finger protein 5 [Morus notabilis]
Swissprottr|Q6R567|RMA1_CAPAN6E-27E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|W9RK94|W9RK94_9ROSA2E-111RING finger protein 5 {ECO:0000313|EMBL:EXB77876.1}
TAIR10AT2G23780.15E-58RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene13378881338565+
GWHAAZE00000007mRNA13378881338565+
GWHAAZE00000007exon13378881338565+
GWHAAZE00000007CDS13378881338565+
Transcript Sequence

Network for GWHGAAZE023183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_329762.60E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.440
SRR3591706second leaf30.059
SRR3591707mature leaf44.045
SRR3591708Shoot apex56.642
SRR3591709Stem73.328
SRR3591710White floral bud48.558
SRR3591711White flower54.935
SRR3591712Green floral bud46.323
SRR3591713Yellow flower40.713
SRP173429 SRR8316895Juvenile bud stage 41.705
SRR8316896Juvenile bud stage 82.232
SRR8316897Juvenile bud stage 33.168
SRR8316894Third green stage 14.710
SRR8316900Third green stage 35.471
SRR8316901Third green stage 44.304
SRR8316898Complete white stage 20.165
SRR8316899Complete white stage 67.243
SRR8316903Complete white stage 27.130
SRR8316902Silver flowering stage20.760
SRR8316904Silver flowering stage24.903
SRR8316905Silver flowering stage12.453
SRR8316906Gold flowering stage 49.177
SRR8316907Gold flowering stage 45.311
SRR8316908Gold flowering stage 43.610
SRP132670SRR6706286Control35.102
SRR6706287Light intensity 50%36.134
SRR6706288Light intensity 20%41.944
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.187
CNS0095593Slightly white alabastrum(diploid) 245.847
CNS0095594Slightly white alabastrum(diploid) 337.539
CNS0095595Whole white alabastrum(diploid) 234.657
CNS0095596Whole white alabastrum(diploid) 327.731
CNS0095597Whole white alabastrum(diploid) 432.538
CNS0095598Silvery flower (diploied) 161.730
CNS0095599Silvery flower (diploied) 265.178
CNS0095600Silvery flower (diploied) 382.315
CNS0095601Golden flower (diploid) 195.776
CNS0095602Golden flower (diploid) 286.603
CNS0095603Golden flower (diploid) 382.232
CNS0095604Slightly white alabastrum(tetraploid) 146.338
CNS0095605Slightly white alabastrum(tetraploid) 243.903
CNS0095606Slightly white alabastrum(tetraploid) 369.558
CNS0095607Whole white alabastrum(tetraploid) 128.760
CNS0095608Whole white alabastrum(tetraploid) 227.890
CNS0095609Whole white alabastrum(tetraploid) 339.209
CNS0095610Silvery flower (tetraploid) 147.744
CNS0095611Silvery flower (tetraploid) 259.341
CNS0095612Silvery flower (tetraploid) 337.861
CNS0095613Golden flower (tetraploid) 147.521
CNS0095614Golden flower (tetraploid) 250.079
CNS0095615Golden flower (tetraploid) 343.984
CRA001975CRR073297Stem 127.821
CRR073298Stem 228.103
CRR073299Stem 336.297
CRR073300Leaf 136.197
CRR073301Leaf 235.638
CRR073302Leaf 336.882
CRR073303Juvenile bud 127.503
CRR073304Juvenile bud 230.138
CRR073305Juvenile bud 336.364
CRR073306Third green 120.747
CRR073307Third green 221.750
CRR073308Third green 321.432
CRR073309Second white 121.117
CRR073310Second white 221.675
CRR073311Second white 314.169
CRR073312Silver flowering 117.440
CRR073313Silver flowering 222.934
CRR073314Silver flowering 312.317
CRR073315Gold flowering 131.745
CRR073316Gold flowering 230.407
CRR073317Gold flowering 332.523
CRR073318Tawny withering 142.012
CRR073319Tawny withering 236.333
CRR073320Tawny withering 343.702