Gene detail

Detail information of GWHGAAZE023181

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004299567.1	3.8946E-166	PREDICTED: serine/threonine-protein kinase RIO1-like [Fragaria vesca subsp. vesca]
COG	YP_255620.1	3E-33	hypothetical protein Saci_0965
Swissprot	tr\|Q3EDL4\|Y1154_ARATH	8E-24	Probable serine/threonine-protein kinase At1g01540
trEMBL	tr\|W9RGD6\|W9RGD6_9ROSA	3E-146	Serine/threonine-protein kinase RIO1 {ECO:0000313\|EMBL:EXB89642.1}
TAIR10	AT5G37350.1	8E-105	Serine/threonine-protein kinase Rio1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1270385	1275110	+
GWHAAZE00000007	mRNA	1270385	1275110	+
GWHAAZE00000007	exon	1270385	1270486	+
GWHAAZE00000007	exon	1270605	1270697	+
GWHAAZE00000007	exon	1270851	1270941	+
GWHAAZE00000007	exon	1271496	1271751	+
GWHAAZE00000007	exon	1272937	1273050	+
GWHAAZE00000007	exon	1273181	1273254	+
GWHAAZE00000007	exon	1273465	1273541	+
GWHAAZE00000007	exon	1273730	1273813	+
GWHAAZE00000007	exon	1273894	1273986	+
GWHAAZE00000007	exon	1274090	1274197	+
GWHAAZE00000007	exon	1274273	1274344	+
GWHAAZE00000007	exon	1274454	1274930	+
GWHAAZE00000007	exon	1275007	1275110	+
GWHAAZE00000007	CDS	1270385	1270486	+
GWHAAZE00000007	CDS	1270605	1270697	+
GWHAAZE00000007	CDS	1270851	1270941	+
GWHAAZE00000007	CDS	1271496	1271751	+
GWHAAZE00000007	CDS	1272937	1273050	+
GWHAAZE00000007	CDS	1273181	1273254	+
GWHAAZE00000007	CDS	1273465	1273541	+
GWHAAZE00000007	CDS	1273730	1273813	+
GWHAAZE00000007	CDS	1273894	1273986	+
GWHAAZE00000007	CDS	1274090	1274197	+
GWHAAZE00000007	CDS	1274273	1274344	+
GWHAAZE00000007	CDS	1274454	1274825	+
GWHAAZE00000007	three_prime_UTR	1274826	1274930	+
GWHAAZE00000007	three_prime_UTR	1275007	1275110	+

Transcript Sequence
>GWHTAAZE023211 ATGTCCAACAGCGTGACAACCTCCATTCGAGAATTTGTTCGAGACATGGCCATTGGTAGAACCAAAGCTACCGATAGAGCAGATCGTGCCACTGTTGAGAAGGTTTTAGATTTCAGAACCAGTCTTATTATAGCCAAATTGAAGGGCCGTCATGTATACGAAGATTTAAATGGTTGCATTTCCACTGGGAAAGAAGCAAATGTTTATCATGCAATCAATTCTGATGGTCACGAACTGGCAATCAAAGTGTTCAAAACATCCGTTCTAGATTTTAAGTATGTCCTGCCTTTACAAAGTCGGATTGGTAAGGGTCATCGGATTGCGTACCCAAAGCGGGGCGGCGGGTCGGGTGATCAGGTAGTGGCGGTGCCGGAGGTATCACATTTGGGGTGGGGACATTGGTACACTTTGAGAGAGCTTGAATTTGCAACTGAGGGGTTTAGCGATGAGAATGTGATTGGTGAAGGTGGGTATGGGATTGTTTACTGTGGGGTTCTGGAGGATAATACTCGTGTTGCTGTTAAGAATTTGCTCAATAACAAGAACAGGGATAGATATATACAAGGGGACTTCCGATTCAGACGCGGATACTGCAAGAACAATCCAAGGAAAATGATGGAGATATGGGCTGAGAAAGAAATGAGGAATCTGAATAGGATGAAAGATGCAGGAATTAGATGCCCTACTGTACATCATGTTAAACTTCATGTACTGGTCATGGATTTCATAGGTAAGGCAGGTTGGGCAGCACCTATTCTGAATGATGCTGCACTGTCAATAGACAAGCTACGAGAAGGTTATAGGGAGATAATAGTTGCCATGCGAATGTTATATCAGAAGGCCAAGCTGGTGCATACAGACCTTAGTGAATTCAACATACTTTACTTTGAGGGACACATGCACATTATTGATGTTTCTCAAGCAGTTGAACCGTCCCAGCCTAATGCAATTGAATTCCTACGTCAAGATTGTGTCCATGTTTCTGATTTTTTCAAGAAACGTGGTGTAGCAGTTATGACAACTCGGGAGCTCTTTGATTTTATAGTTGATCCGAGTATTGGCGAGGAAGCAGTGGACAGTTATCTGGATGAGATACAACAAAAAATTGTGGCCAGAGGAGATATATCTGGGGAGGATGAAATTGCTGAATCCGTATTTGTGCAGTCATACATTCCGAGCACACTAAACCAGGTAACGAATGTTGAAGCAGATGTAGTACGGTTAACAAGTGGCGAGGACACTGAAGACATTTACTATAAAACTATCACAGGACTAAGTATGGCGCTTTCTAGTGTCCCACCGTCTCCACCTGAGACCAAATTTGACTCATCCGGCAGTGATGAAGAAAACTCGATTGCTTCAGATTCCTCATCCACAATCGAGGAGGCACAGGAGGAACCTATTGATAAAAAGGTTGCTAGAAAAGAAAACAAGAAGAAAGTCAAAGAAGAGAAGAGGGAAGCTCGGAAGCACAAATTGCGAAAGGCTGTAAAGAAAAAAAGGAAAAAGTTGTCGAAAGGCGGGAAGAGACGGTAGTTTGTTGGGATGGACCGATGGAGATGCAAGATCAGTTAGGTATTATTATTATTAACTCATCTTCTTAACTAATGTACACTGTTATTTGATGAGACTTTAGATTAAAGTTAGATTAAGTTATTATACATTGTATTTGATGAGACTTCAATTATGTTGCTCAGATCCCCCAACATTTATGTGAAGATTCTATATAAATGTTACAATTGAAT

Network for GWHGAAZE023181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01163.23	RIO1	161	343	8.50E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
K07178	RIOK1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.196
	SRR3591706	second leaf	1.974
	SRR3591707	mature leaf	1.192
	SRR3591708	Shoot apex	5.498
	SRR3591709	Stem	2.348
	SRR3591710	White floral bud	1.846
	SRR3591711	White flower	2.934
	SRR3591712	Green floral bud	5.460
	SRR3591713	Yellow flower	1.053
SRP173429	SRR8316895	Juvenile bud stage	5.574
	SRR8316896	Juvenile bud stage	7.057
	SRR8316897	Juvenile bud stage	1.019
	SRR8316894	Third green stage	2.615
	SRR8316900	Third green stage	5.818
	SRR8316901	Third green stage	4.912
	SRR8316898	Complete white stage	1.177
	SRR8316899	Complete white stage	7.438
	SRR8316903	Complete white stage	1.404
	SRR8316902	Silver flowering stage	0.733
	SRR8316904	Silver flowering stage	1.094
	SRR8316905	Silver flowering stage	0.518
	SRR8316906	Gold flowering stage	1.410
	SRR8316907	Gold flowering stage	2.227
	SRR8316908	Gold flowering stage	0.751
SRP132670	SRR6706286	Control	3.587
	SRR6706287	Light intensity 50%	3.826
	SRR6706288	Light intensity 20%	3.992
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.012
	CNS0095593	Slightly white alabastrum(diploid) 2	5.064
	CNS0095594	Slightly white alabastrum(diploid) 3	5.814
	CNS0095595	Whole white alabastrum(diploid) 2	3.995
	CNS0095596	Whole white alabastrum(diploid) 3	3.435
	CNS0095597	Whole white alabastrum(diploid) 4	4.503
	CNS0095598	Silvery flower (diploied) 1	5.444
	CNS0095599	Silvery flower (diploied) 2	3.856
	CNS0095600	Silvery flower (diploied) 3	2.303
	CNS0095601	Golden flower (diploid) 1	2.765
	CNS0095602	Golden flower (diploid) 2	1.965
	CNS0095603	Golden flower (diploid) 3	2.100
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.541
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.448
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.606
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.580
	CNS0095610	Silvery flower (tetraploid) 1	2.395
	CNS0095611	Silvery flower (tetraploid) 2	2.954
	CNS0095612	Silvery flower (tetraploid) 3	21.008
	CNS0095613	Golden flower (tetraploid) 1	1.557
	CNS0095614	Golden flower (tetraploid) 2	0.877
	CNS0095615	Golden flower (tetraploid) 3	0.236
CRA001975	CRR073297	Stem 1	5.655
	CRR073298	Stem 2	4.846
	CRR073299	Stem 3	2.289
	CRR073300	Leaf 1	4.105
	CRR073301	Leaf 2	3.419
	CRR073302	Leaf 3	1.777
	CRR073303	Juvenile bud 1	2.268
	CRR073304	Juvenile bud 2	2.262
	CRR073305	Juvenile bud 3	2.965
	CRR073306	Third green 1	0.671
	CRR073307	Third green 2	0.555
	CRR073308	Third green 3	0.326
	CRR073309	Second white 1	4.010
	CRR073310	Second white 2	3.559
	CRR073311	Second white 3	6.711
	CRR073312	Silver flowering 1	5.315
	CRR073313	Silver flowering 2	5.349
	CRR073314	Silver flowering 3	4.251
	CRR073315	Gold flowering 1	2.891
	CRR073316	Gold flowering 2	2.431
	CRR073317	Gold flowering 3	0.900
	CRR073318	Tawny withering 1	2.776
	CRR073319	Tawny withering 2	2.756
	CRR073320	Tawny withering 3	3.017