Detail information of GWHGAAZE023171


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02401.10unnamed protein product [Coffea canephora]
COGNP_577851.13E-32translation initiation factor IF-2
trEMBLtr|A0A068U1K8|A0A068U1K8_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02401.1}
TAIR10AT5G38640.10NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene978118983210-
GWHAAZE00000007mRNA978118983210-
GWHAAZE00000007exon978118978452-
GWHAAZE00000007exon978787978841-
GWHAAZE00000007exon978938979034-
GWHAAZE00000007exon979124979868-
GWHAAZE00000007exon980367980734-
GWHAAZE00000007exon982720982817-
GWHAAZE00000007exon983083983210-
GWHAAZE00000007CDS983083983210-
GWHAAZE00000007CDS982720982817-
GWHAAZE00000007CDS980367980734-
GWHAAZE00000007CDS979124979868-
GWHAAZE00000007CDS978938979034-
GWHAAZE00000007CDS978787978841-
GWHAAZE00000007CDS978390978452-
GWHAAZE00000007three_prime_UTR978118978389-
Transcript Sequence

Network for GWHGAAZE023171

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01008.18IF-2B2085005.20E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03680EIF2B4 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0044237biological_processcellular metabolic process

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE023171.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.790
SRR3591706second leaf18.249
SRR3591707mature leaf14.187
SRR3591708Shoot apex46.111
SRR3591709Stem21.020
SRR3591710White floral bud17.465
SRR3591711White flower16.950
SRR3591712Green floral bud28.834
SRR3591713Yellow flower12.131
SRP173429 SRR8316895Juvenile bud stage 15.403
SRR8316896Juvenile bud stage 23.578
SRR8316897Juvenile bud stage 11.089
SRR8316894Third green stage 10.048
SRR8316900Third green stage 24.344
SRR8316901Third green stage 22.405
SRR8316898Complete white stage 5.080
SRR8316899Complete white stage 26.240
SRR8316903Complete white stage 11.465
SRR8316902Silver flowering stage5.652
SRR8316904Silver flowering stage6.933
SRR8316905Silver flowering stage3.483
SRR8316906Gold flowering stage 11.015
SRR8316907Gold flowering stage 10.546
SRR8316908Gold flowering stage 11.422
SRP132670SRR6706286Control12.337
SRR6706287Light intensity 50%13.122
SRR6706288Light intensity 20%14.099
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.841
CNS0095593Slightly white alabastrum(diploid) 219.272
CNS0095594Slightly white alabastrum(diploid) 320.319
CNS0095595Whole white alabastrum(diploid) 215.150
CNS0095596Whole white alabastrum(diploid) 316.251
CNS0095597Whole white alabastrum(diploid) 412.885
CNS0095598Silvery flower (diploied) 112.272
CNS0095599Silvery flower (diploied) 211.552
CNS0095600Silvery flower (diploied) 38.889
CNS0095601Golden flower (diploid) 111.818
CNS0095602Golden flower (diploid) 29.884
CNS0095603Golden flower (diploid) 39.190
CNS0095604Slightly white alabastrum(tetraploid) 124.205
CNS0095605Slightly white alabastrum(tetraploid) 223.378
CNS0095606Slightly white alabastrum(tetraploid) 326.912
CNS0095607Whole white alabastrum(tetraploid) 112.949
CNS0095608Whole white alabastrum(tetraploid) 213.582
CNS0095609Whole white alabastrum(tetraploid) 318.289
CNS0095610Silvery flower (tetraploid) 111.228
CNS0095611Silvery flower (tetraploid) 211.889
CNS0095612Silvery flower (tetraploid) 38.075
CNS0095613Golden flower (tetraploid) 16.925
CNS0095614Golden flower (tetraploid) 210.264
CNS0095615Golden flower (tetraploid) 36.064
CRA001975CRR073297Stem 117.298
CRR073298Stem 215.664
CRR073299Stem 39.945
CRR073300Leaf 117.735
CRR073301Leaf 214.581
CRR073302Leaf 38.141
CRR073303Juvenile bud 18.217
CRR073304Juvenile bud 25.025
CRR073305Juvenile bud 39.555
CRR073306Third green 12.108
CRR073307Third green 21.769
CRR073308Third green 31.371
CRR073309Second white 11.925
CRR073310Second white 22.558
CRR073311Second white 32.610
CRR073312Silver flowering 12.187
CRR073313Silver flowering 22.600
CRR073314Silver flowering 31.950
CRR073315Gold flowering 11.402
CRR073316Gold flowering 22.669
CRR073317Gold flowering 31.696
CRR073318Tawny withering 16.531
CRR073319Tawny withering 26.325
CRR073320Tawny withering 37.400