Gene detail

Detail information of GWHGAAZE023168

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02398.1	7.3765E-144	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LE42\|HAC5_ARATH	6E-96	Histone acetyltransferase HAC5
trEMBL	tr\|A0A068U457\|A0A068U457_COFCA	3E-144	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02398.1}
TAIR10	AT1G55970.1	4E-111	histone acetyltransferase of the CBP family 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	935118	940228	+
GWHAAZE00000007	mRNA	935118	940228	+
GWHAAZE00000007	exon	935118	935208	+
GWHAAZE00000007	exon	935304	935540	+
GWHAAZE00000007	exon	936422	937857	+
GWHAAZE00000007	exon	938071	938358	+
GWHAAZE00000007	exon	938445	938723	+
GWHAAZE00000007	exon	938843	938971	+
GWHAAZE00000007	exon	939533	939675	+
GWHAAZE00000007	exon	939892	940228	+
GWHAAZE00000007	CDS	935118	935208	+
GWHAAZE00000007	CDS	935304	935540	+
GWHAAZE00000007	CDS	936422	937857	+
GWHAAZE00000007	CDS	938071	938358	+
GWHAAZE00000007	CDS	938445	938723	+
GWHAAZE00000007	CDS	938843	938971	+
GWHAAZE00000007	CDS	939533	939675	+
GWHAAZE00000007	CDS	939892	940228	+

Transcript Sequence
>GWHTAAZE023198 ATGTTTCCTTTTGTTAATCACTTCGAAGCTACTAGCAGTGACGATAACAGTTTAAGAAGTGACAATACTAATAGTTCTGGATTCTTTCAAGATAAGGGATTTAATCAGGGAATTGAGGAGAATGAAGAGTTTTCGCCGCTGAGTATGAATAATCAGGGTTCTACGAATACCGGAATTTTCCCCGGTAATGTCCCGGATTTGGATTGGAGAGGGTTTAGTGAAAGTGGACTTTCTAAAAGTGGAATCAGTTTTCCTCAAAATAGTTTAGAGGTTATGTCTGAGGCCTCATTGGGAAATTATACTCAACAGCAATGTATTATTGATCAAGGTGAGTTGAATCTGAGAGATTATGGAGGTCTTTTTGCGAACAACCACAATGCTAATCTCATGGATTTTCCATCAGCATTGGAGGGAACTGTAGAGTTTCCTTGTTCAAATATGTGGAGACCACAAAAGAATGCACAGACTGTTCCGATAGCCTCTGGTATTCCGCCTCATACAATATCAAATGCACCCTCCTTAACTGAGGATTCACTGCAACCAAAGCCTCAGTGGCCTGTATCTCAGCAATTCTATCAGTGGCACCATTTGCCTTATTTGCCTTTTGATGAGCAATCCAAGGCCCATTCTAATTGGTGCAGACATGATGAATTTTTCAATCATTTTACAGGGAAAGAATTATCTAACCTGCCCCATCTCCCTACAGAACAATCGCAAGTGGTTCAACATGTTGTTTCGGGGAATTCTGCCCTTGGCTTTGGTTCAATTGCAGCTGCTGAAGTTACAAATCCAACTAACCTAACAGTACGCGAACTTTTGCTTTTATATATCAAGCAGAAGAGTTGGGGTGGCAACAGAGCCTCCTTTCTGGAACATATGCATGTGATAGAGTGCAATCATCACGAATGTAAATGTGGTCAGTACTTTTGGCTGGTATCACATTTTGACAACTGCGATAATTCCAATTGTAGCATATGCGGAACTGTTCAAAGGTCACCCGTAAAACGAAAAAATGGTCTATCAGAGGCTTTCTGTGATGTAGATTATAATGCCACCTGCACTGACAATTCATTAAAACGTATGAGGATAGACAATCCCATTGCTAGCAGAACTTCACATGAAGTTGCTCCATTAACAAATCAACCTTTCTCAGCTGGGTTTAATGATGGTGATATGAAGTGGTACACCGAAATCTTGAGCTTCAATGAGGGCCCAACAAGCTCAGGTGTAACTAAGACTGATGTCGTAAGCGAATCTCAGGCTTCGGATTTAAATTATGCGTATAATTTTTCTGAAGAGCTCACCATCAGCTGTAATCAGAGGGAGACAGACCATTCATGCATGAGTGAGATCGCAAGTGATGCAGTAGATGACTCTTACCACATTGTGCCCATCTTATCAGAAGATCCCGTTCGCAGTCTTAATAAAGACCAGGAGAAAGACGACATATATAATTCAATATTGGATATAAATAATGCATTAAATAATGCATGTACTTTCTCTGAAGACCTTGGCATTGATTGTGAGCAAGGGGAAGTTGACCACTCAAGCATGTCAGAGATCGGAAGTTACGCCATAGATAATTTCCAAGGATTGAGTTTTGACTGTGGGCCCATTTTCTCTGAAGAGCATAATAGTTGTTGTAAAGAAGAGCAGAAGTCCGTGGATCCAGAAATAAAAGTAAAAAGTGTGTCTTTGGCTGATTTTTTCACAGCAGAGCAAATGGAAGAACATTTATATAGTTTACGACAACTGAGTGGTCAGGAAGTAAGAGGAAAGGCGACACATTTTGATCTTGAAAATATGTGCCAATTGTGCTCCATGGATAAGCTGGTGTTTGCCCCTGCTCCAAAATATTGTTCATTTTGTGGTACTCGTATAAAGCGTAACATGGTTTATCACTGGACACTGGATGAGTCGGGTGGATCGGAATATCATTTCTGTACCAAATGCTTGAACGGGAATCGTGGGGCTAATATCAAATTCAATGGGGCCTCTATTCCCAAATCAAAGCTGCAGAAGGGAAAGACTAATGAGAAAATTGAAGAATCTTGGGTTCAGTGTGGTAAATGTGAATTCTGGCAGCATCAGATTTGTGCTCTATATAATGAGAAAAGAGATTTGGAGGGCAAAGGGAAGTACGTCTGTCCAAAATGCTGCTTAGAAGAAATCGGAAGTGGACAGTGGGTGCCATTACCGAAGATGGCTGCTTTCGAAGCAAAGGATCTACCAAGAACTATTCTCAGTGATCACATAGAGCGAAGACTATTTACGCATCTCGATCAAGAGAGAGAAGAAAGGGCAATGGCTTTAGGAAAGAAAATTGATGAGGTCCCTGGAGCGTCAGGCCTTGTTGTTAGAGTGGTCTTATCTGTTCAGAAACAATTGAAAGTGAGCCAGCAATATCTTGGTATCTTTCAAGGGGAGAATTATCCAGCCGAATTTGAATATACATCAAAGATTGGATACCTTGATTATTGCCAGAAACGAGGCTTTGGAACATGCTACATTTGGGCCTGCCCACCTTTCACAGGGGAAGATTATATCTTATACTGCCATCCTGAGATTCAGAAAACACCCAAGCCGGATAAGCTGCGATCCTGGTACAAATCGATGCTAAGAAAAGCGGAGAAAGAAAATATTGCGGTGGATTACACAAATTTATATGATCAGTTCTTTGTTCCAAGAGAATGCAACACCAAGATAACTGCAGCTCGTTTGCCGTATTTTGATGGTGGCTATTGGTCAATCGCTGCTCAAAATATAGTTGCCAAAATTGAACAAGAGAATAGAGGAGGACGGGAGAAGCTTGAAAAGCTAGTGACCAAGAGAACTTTTAAATCCATGGGACACAGCAACCCTAGTGAAGGAGCAAAAGATATTTTGGTGATGCAAAAGGTACTTTATGCTGAACTTTTTGTCCTTCATAATATCCATTAA

Network for GWHGAAZE023168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08214.12	HAT_KAT11	821	915	3.00E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04498	EP300, CREBBP, KAT3	Wnt signaling pathway	map04310
		Notch signaling pathway	map04330
		TGF-beta signaling pathway	map04350
		JAK-STAT signaling pathway	map04630
		HIF-1 signaling pathway	map04066
		FoxO signaling pathway	map04068
		cAMP signaling pathway	map04024
		Cell cycle	map04110
		Adherens junction	map04520
		Glucagon signaling pathway	map04922
		Growth hormone synthesis, secretion and action	map04935
		Thyroid hormone signaling pathway	map04919
		Melanogenesis	map04916
		Long-term potentiation	map04720

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0016573	biological_process	histone acetylation
GO:0004402	molecular_function	histone acetyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.006
	SRR3591706	second leaf	0.030
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.151
	SRR3591709	Stem	0.099
	SRR3591710	White floral bud	0.398
	SRR3591711	White flower	0.471
	SRR3591712	Green floral bud	0.183
	SRR3591713	Yellow flower	0.254
SRP173429	SRR8316895	Juvenile bud stage	0.106
	SRR8316896	Juvenile bud stage	0.130
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.064
	SRR8316900	Third green stage	0.216
	SRR8316901	Third green stage	0.281
	SRR8316898	Complete white stage	0.020
	SRR8316899	Complete white stage	0.041
	SRR8316903	Complete white stage	0.076
	SRR8316902	Silver flowering stage	0.111
	SRR8316904	Silver flowering stage	0.122
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.114
	SRR8316907	Gold flowering stage	0.002
	SRR8316908	Gold flowering stage	0.135
SRP132670	SRR6706286	Control	0.187
	SRR6706287	Light intensity 50%	0.101
	SRR6706288	Light intensity 20%	0.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.013
	CNS0095593	Slightly white alabastrum(diploid) 2	0.053
	CNS0095594	Slightly white alabastrum(diploid) 3	0.137
	CNS0095595	Whole white alabastrum(diploid) 2	0.094
	CNS0095596	Whole white alabastrum(diploid) 3	0.066
	CNS0095597	Whole white alabastrum(diploid) 4	0.144
	CNS0095598	Silvery flower (diploied) 1	0.004
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.014
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.121
	CNS0095603	Golden flower (diploid) 3	0.152
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.257
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.010
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.208
	CNS0095610	Silvery flower (tetraploid) 1	0.278
	CNS0095611	Silvery flower (tetraploid) 2	0.364
	CNS0095612	Silvery flower (tetraploid) 3	0.236
	CNS0095613	Golden flower (tetraploid) 1	0.251
	CNS0095614	Golden flower (tetraploid) 2	0.137
	CNS0095615	Golden flower (tetraploid) 3	0.181
CRA001975	CRR073297	Stem 1	0.033
	CRR073298	Stem 2	0.083
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.096
	CRR073301	Leaf 2	0.067
	CRR073302	Leaf 3	0.050
	CRR073303	Juvenile bud 1	0.022
	CRR073304	Juvenile bud 2	0.053
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.048
	CRR073307	Third green 2	0.049
	CRR073308	Third green 3	0.013
	CRR073309	Second white 1	0.020
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.145
	CRR073312	Silver flowering 1	0.048
	CRR073313	Silver flowering 2	0.039
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000