Gene detail

Detail information of GWHGAAZE023165

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085555.1	0	PREDICTED: proline-rich receptor-like protein kinase PERK8 [Sesamum indicum]
COG	YP_004092358.1	2E-27	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q9FFW5\|PERK8_ARATH	0	Proline-rich receptor-like protein kinase PERK8
trEMBL	tr\|A0A061EPS7\|A0A061EPS7_THECC	0	Proline-rich receptor protein kinase PERK10 isoform 1 {ECO:0000313\|EMBL:EOY04324.1}
TAIR10	AT5G38560.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	903634	907542	+
GWHAAZE00000007	mRNA	903634	907542	+
GWHAAZE00000007	exon	903634	904252	+
GWHAAZE00000007	exon	904601	905008	+
GWHAAZE00000007	exon	905243	905329	+
GWHAAZE00000007	exon	905877	905947	+
GWHAAZE00000007	exon	906061	906137	+
GWHAAZE00000007	exon	906437	906584	+
GWHAAZE00000007	exon	906807	906968	+
GWHAAZE00000007	exon	907348	907542	+
GWHAAZE00000007	CDS	903634	904252	+
GWHAAZE00000007	CDS	904601	905008	+
GWHAAZE00000007	CDS	905243	905329	+
GWHAAZE00000007	CDS	905877	905947	+
GWHAAZE00000007	CDS	906061	906137	+
GWHAAZE00000007	CDS	906437	906584	+
GWHAAZE00000007	CDS	906807	906968	+
GWHAAZE00000007	CDS	907348	907542	+

Transcript Sequence
>GWHTAAZE023195 TACACCTCCTCCATCAACTCCTTCAACCCCACCTCCTCAATCCCTCCCCATTCCTCCACCCCACCTCCACCACCACCACCGCCTCCTCCCCCAGATGGTTCCCCTTCTCCACCACCTCCAAGAATAGTGCCACCACCTTCCTCCAGCTCTCCGCCTCCGCCACTTGAAAATCCACCAGAGAATTCTCCTCCACCTCCTCAGCTAACACCACCGCCTACATCTACACCTCCACCCTCAACAAGAACCCCTCCAAGTCCACCATCATCTTCTCCTCCTGTCCCTTCATTATCTTCCCCGCCACCTCTTTCTCCTCCTGCTCCCTCAACAAATTCATCTGGCAATGGAACCACACGCGCCTCACCATTACCAGAGATCCCCACAGAGAAACCAACTGCAAGACCTATGCCTGGCGGCCCAAATATTACGGCCAATGCAATGCCCAGAGATTCCGGGGGAATAAAAGTCGGAGTAGCAGTGTCGGTTGGCGTTGTTGTGGGGTTTTTGGCGCTTAGTCTTATTGTGATGGGCGTTTGGTATACACAAAAAAGGAAGAAAAGGGCATCCAGATTAAATAGTGGGTACAACATGCCTTCGCCATTTGCTTCCTCCCAAAATTCAGATGCATCTTTCTTAAGGCCGCAACCATCGGTTAACAGACCTGGAAGTGCTTCTGGAAACAATTTCTTGTACTCCCCGGATCCTGGTGGGGTCGGCAATTCTAGGTCATGGTTCACGTATGAGGAATTATCTGAGGCCACAGATGGGTTTTCAGAAAGCAATCTTTTGGGTGAAGGTGGGTTTGGCTGTGTTTACAAAGGGTTCCTCAAAGATGGTAGAGAAATTGCCGTTAAACAGCTGAAGATTGGTGGTGGACAGGGCGAGCGTGAGTTTAGGGCCGAAGTTGATATTATCAGTAGAGTACACCATCGCCATTTGGTTTCGCTCGTGGGTTACTGTATTTCTGAGCATCAAAGATTGCTTGTTTATGATTATGTGGCAAACAACACCCTTCATTATCATCTCCATGCTGAAGACAGGCCAGTAATGGACTGGGCTACCCGAGTTAAAGTTGCTGCTGGAGCAGCTCGAGGAATAGCTTATCTACATGAAGACTGCCATCCACGAATTATTCACAGGGATATTAAGTCATCAAACATCCTTTTGGATAACAACTTTGACGCTCAGGTTGCAGATTTTGGGCTTGCAAAGTTAGCACAGGATGCCAACACACATGTGACCACCCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAGTACGCATCAAGTGGAAAGTTGACTGAAAAGTCCGATGTATATTCTTTCGGGGTTGTCCTTTTAGAGCTCATCACTGGTCGTAAGCCTGTGGACTCATCTCAGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACGCAAGCACTTGATAATGAAAACTTTGAGGAATTGGTCGATCCCAGGCTCGAAAACAACTTTGTTAAAGTTGAGATGTTCCGTATGATTGAAGCAGCTGCAGCGTGTGTACGCCATTTAGCTTCAAAGAGACCACGAATGAGCCAGGTGGTGAGAGCTTTAAACTCGATATTTGAGTTCGCGGATCTAACCAATGGAATGAGACCCGGGCAAAGTGAAATTTTCGATTCAAGAGAACAATCTGCACAAATCAGAATGTTCCAAAGGATGGCTTTTGGAAGTCAAGATTACAGTTCAGAGTTTTTCAATCAAACTCAGAGCAGCTGGAGAAGTAGAGAGTAA

Network for GWHGAAZE023165

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	260	529	9.90E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.908
	SRR3591706	second leaf	20.772
	SRR3591707	mature leaf	14.354
	SRR3591708	Shoot apex	18.299
	SRR3591709	Stem	37.621
	SRR3591710	White floral bud	14.640
	SRR3591711	White flower	10.856
	SRR3591712	Green floral bud	15.409
	SRR3591713	Yellow flower	6.570
SRP173429	SRR8316895	Juvenile bud stage	15.232
	SRR8316896	Juvenile bud stage	15.082
	SRR8316897	Juvenile bud stage	7.237
	SRR8316894	Third green stage	5.436
	SRR8316900	Third green stage	13.360
	SRR8316901	Third green stage	15.967
	SRR8316898	Complete white stage	1.301
	SRR8316899	Complete white stage	13.691
	SRR8316903	Complete white stage	9.631
	SRR8316902	Silver flowering stage	3.139
	SRR8316904	Silver flowering stage	5.814
	SRR8316905	Silver flowering stage	2.949
	SRR8316906	Gold flowering stage	10.236
	SRR8316907	Gold flowering stage	8.010
	SRR8316908	Gold flowering stage	10.018
SRP132670	SRR6706286	Control	11.514
	SRR6706287	Light intensity 50%	11.548
	SRR6706288	Light intensity 20%	11.970
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.988
	CNS0095593	Slightly white alabastrum(diploid) 2	10.387
	CNS0095594	Slightly white alabastrum(diploid) 3	11.678
	CNS0095595	Whole white alabastrum(diploid) 2	8.689
	CNS0095596	Whole white alabastrum(diploid) 3	7.304
	CNS0095597	Whole white alabastrum(diploid) 4	8.364
	CNS0095598	Silvery flower (diploied) 1	11.803
	CNS0095599	Silvery flower (diploied) 2	10.483
	CNS0095600	Silvery flower (diploied) 3	8.792
	CNS0095601	Golden flower (diploid) 1	9.739
	CNS0095602	Golden flower (diploid) 2	9.447
	CNS0095603	Golden flower (diploid) 3	9.592
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.144
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.933
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.420
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.791
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.851
	CNS0095610	Silvery flower (tetraploid) 1	7.768
	CNS0095611	Silvery flower (tetraploid) 2	8.114
	CNS0095612	Silvery flower (tetraploid) 3	7.760
	CNS0095613	Golden flower (tetraploid) 1	3.662
	CNS0095614	Golden flower (tetraploid) 2	8.013
	CNS0095615	Golden flower (tetraploid) 3	6.119
CRA001975	CRR073297	Stem 1	22.370
	CRR073298	Stem 2	19.016
	CRR073299	Stem 3	17.175
	CRR073300	Leaf 1	17.806
	CRR073301	Leaf 2	19.492
	CRR073302	Leaf 3	8.629
	CRR073303	Juvenile bud 1	12.027
	CRR073304	Juvenile bud 2	6.357
	CRR073305	Juvenile bud 3	16.940
	CRR073306	Third green 1	2.514
	CRR073307	Third green 2	2.507
	CRR073308	Third green 3	4.657
	CRR073309	Second white 1	4.304
	CRR073310	Second white 2	2.570
	CRR073311	Second white 3	3.182
	CRR073312	Silver flowering 1	3.854
	CRR073313	Silver flowering 2	3.028
	CRR073314	Silver flowering 3	3.411
	CRR073315	Gold flowering 1	6.889
	CRR073316	Gold flowering 2	7.983
	CRR073317	Gold flowering 3	6.370
	CRR073318	Tawny withering 1	28.539
	CRR073319	Tawny withering 2	34.246
	CRR073320	Tawny withering 3	36.034