Gene detail

Detail information of GWHGAAZE023156

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHJ08573.1	0	PDH2 [Helianthus tuberosus]
COG	YP_004989451.1	6E-60	proline dehydrogenase
Swissprot	tr\|P92983\|PROD1_ARATH	2E-180	Proline dehydrogenase 1, mitochondrial (Precursor)
trEMBL	tr\|W6E4V4\|W6E4V4_HELTU	0	PDH2 {ECO:0000313\|EMBL:AHJ08573.1}
TAIR10	AT3G30775.1	1E-142	Methylenetetrahydrofolate reductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	723512	726173	+
GWHAAZE00000007	mRNA	723512	726173	+
GWHAAZE00000007	exon	723512	723976	+
GWHAAZE00000007	exon	724882	725530	+
GWHAAZE00000007	exon	725654	725686	+
GWHAAZE00000007	exon	725801	726041	+
GWHAAZE00000007	exon	726128	726173	+
GWHAAZE00000007	CDS	723512	723976	+
GWHAAZE00000007	CDS	724882	725530	+
GWHAAZE00000007	CDS	725654	725686	+
GWHAAZE00000007	CDS	725801	726041	+
GWHAAZE00000007	CDS	726128	726173	+

Transcript Sequence
>GWHTAAZE023186 ATGGCCCTCCGTCGTATCTCCCCAAACTTGCTCCAAAAACTCATCTTCTCCGCCAGACACGTCAGCTCCTCCTCCTCAGCCACGTCACCCAATCTGGACGATGTGGGGGGGCTGTTCACGTCCGTACCAACGTCAAAGCTGATAAAATCGTCGGTGACGCTCCACATGGCGGCGATTGGGCCGATGGTGGATTTGGGCGCGTGGGTGATGAACTCGAGGCTGATGGAGACTGCTATCGTGCGCGGGTTGATATTGGGCACCATTAAGGGCACGTTTTATGACCATTTCTGTGCGGGTCCGGGTATGGAGGATGTGGGTCGGACCGTGAAAAAGCTTTGGGAAGTCGGGTTGAAAGGGATGTTGGATTACGGGTTGGAGCATGCTGTCGACAATGAGTCTTGTGATCGCAATTTGGAGGAGTTTGTTCAGACAGTTGAATCTGCCAAATCTCTTCCTCCATCTTCTGTTAGCTTTGTGGTAGTGAAGATCACTGCAATTTGCCCAGTTAGTCTCCTTAAGCGAATTAGCGATCTATTAAGATGGGAGTACAATAACCCATCTTCCCATTCCCGATTCAAGATCAACGACATGCTTCCAATTTTCGCTGATTCGAGCCCTTTTTATCATACGCTTGAAAAACCAGATGCATTAACGCAACAAGAAGAGCAAGATCTTCACCTAGCCCACCAAAGACTCCGAATTATAAGCGAAAAATGCCTCGAATCCAACATCCCACTTTTACTTGATGCAGAGGACACATCAATTCAACCCGCGATTGATTACTTCACATACTCTGCAGCTATTATGTACAACAAAGGCGAAACTCCAATCATTTTCGGTACACTTCAAGCTTATTTAAAAGATGCGAAAGAAAGGTTGTTATTGGTAAAGAAAGCTGCTGATAAAATGGGATTGCCATTGGGGATTAAATTGGTGAGGGGAGCTTATATTGCAAGCGAAAGGAAATTAGCTGCTTCTTTGGGCGTTGAGTCCCCAGTTCACAATAGCATTGAGGAAACACACGCTTCTTATAACGATTGCGCCTCTTTCTTGCTTGAGGAGATTAGTAATGGCTCTGGCGCGGTTGTTCTTGCTACCCACAATGTCGAATCAGAAAATGTTGCTGGTACACATAATGCTGAATCAGGGAAATTGGCGTCTGCAAAAGCACGAGATTTGGGGATTGGGAAGGGAAATAAAAGCGTGCAATTCGCGCAACTATATGGAATGGCGGATTCGCTTTCGTTTGGATTGAGAAATGCTGGATTTGAAGTGAGCAAATATCTGCCATTTGGACCAATAGAGCAAATTCTGCCTTATCTTTTAAGGAGAGCTGAAGAGAACAAAGGGATGTTATCTTCTTCAACCCATGACAGAAAACTTATGTGGAAGGAGTTGCAGAGGAGACTAAAAGCAAAAGCTACGGTTGTATAA

Network for GWHGAAZE023156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01619.19	Pro_dh	107	454	1.70E-68

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00318	PRODH, fadM, putB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.732
	SRR3591706	second leaf	1.400
	SRR3591707	mature leaf	3.220
	SRR3591708	Shoot apex	2.968
	SRR3591709	Stem	7.902
	SRR3591710	White floral bud	25.529
	SRR3591711	White flower	8.373
	SRR3591712	Green floral bud	31.929
	SRR3591713	Yellow flower	8.592
SRP173429	SRR8316895	Juvenile bud stage	4.682
	SRR8316896	Juvenile bud stage	18.877
	SRR8316897	Juvenile bud stage	7.905
	SRR8316894	Third green stage	6.292
	SRR8316900	Third green stage	19.250
	SRR8316901	Third green stage	20.270
	SRR8316898	Complete white stage	5.634
	SRR8316899	Complete white stage	9.549
	SRR8316903	Complete white stage	8.802
	SRR8316902	Silver flowering stage	3.049
	SRR8316904	Silver flowering stage	3.730
	SRR8316905	Silver flowering stage	1.667
	SRR8316906	Gold flowering stage	5.167
	SRR8316907	Gold flowering stage	5.312
	SRR8316908	Gold flowering stage	4.291
SRP132670	SRR6706286	Control	16.381
	SRR6706287	Light intensity 50%	15.872
	SRR6706288	Light intensity 20%	16.775
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.203
	CNS0095593	Slightly white alabastrum(diploid) 2	10.535
	CNS0095594	Slightly white alabastrum(diploid) 3	21.033
	CNS0095595	Whole white alabastrum(diploid) 2	23.823
	CNS0095596	Whole white alabastrum(diploid) 3	30.747
	CNS0095597	Whole white alabastrum(diploid) 4	35.872
	CNS0095598	Silvery flower (diploied) 1	6.772
	CNS0095599	Silvery flower (diploied) 2	7.485
	CNS0095600	Silvery flower (diploied) 3	10.142
	CNS0095601	Golden flower (diploid) 1	9.435
	CNS0095602	Golden flower (diploid) 2	8.302
	CNS0095603	Golden flower (diploid) 3	8.181
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.862
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.503
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.663
	CNS0095608	Whole white alabastrum(tetraploid) 2	51.292
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.431
	CNS0095610	Silvery flower (tetraploid) 1	11.134
	CNS0095611	Silvery flower (tetraploid) 2	13.423
	CNS0095612	Silvery flower (tetraploid) 3	7.116
	CNS0095613	Golden flower (tetraploid) 1	5.279
	CNS0095614	Golden flower (tetraploid) 2	10.042
	CNS0095615	Golden flower (tetraploid) 3	11.343
CRA001975	CRR073297	Stem 1	8.871
	CRR073298	Stem 2	10.774
	CRR073299	Stem 3	9.891
	CRR073300	Leaf 1	12.112
	CRR073301	Leaf 2	9.725
	CRR073302	Leaf 3	8.107
	CRR073303	Juvenile bud 1	7.483
	CRR073304	Juvenile bud 2	6.791
	CRR073305	Juvenile bud 3	4.664
	CRR073306	Third green 1	4.106
	CRR073307	Third green 2	4.189
	CRR073308	Third green 3	3.530
	CRR073309	Second white 1	1.547
	CRR073310	Second white 2	2.249
	CRR073311	Second white 3	3.837
	CRR073312	Silver flowering 1	5.368
	CRR073313	Silver flowering 2	3.551
	CRR073314	Silver flowering 3	3.625
	CRR073315	Gold flowering 1	1.858
	CRR073316	Gold flowering 2	0.441
	CRR073317	Gold flowering 3	0.552
	CRR073318	Tawny withering 1	3.567
	CRR073319	Tawny withering 2	2.989
	CRR073320	Tawny withering 3	3.325