Gene detail

Detail information of GWHGAAZE023147

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP19885.1	0	unnamed protein product [Coffea canephora]
COG	YP_004903456.1	9E-41	putative chitinase
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	0	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068VGC2\|A0A068VGC2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_763 {ECO:0000313\|EMBL:CDP19885.1}
TAIR10	AT3G51550.1	0	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	614426	618612	+
GWHAAZE00000007	mRNA	614426	618612	+
GWHAAZE00000007	exon	614426	614870	+
GWHAAZE00000007	exon	615142	615558	+
GWHAAZE00000007	exon	616154	618612	+
GWHAAZE00000007	CDS	614426	614870	+
GWHAAZE00000007	CDS	615142	615558	+
GWHAAZE00000007	CDS	616154	618612	+

Transcript Sequence
>GWHTAAZE023177 ATGAGACACAATTATAATTTGCTAGCCAAATTCATCATTTTGGCCGGAGTTCTCGCCGGAGCCTCGCCGGAGTTGGTTCTCAGTCAAGGTCAATGTGGATGCGCCTCAACCGACTGCTGTAGCAAATACGGATATTGCGGGCAAGGTGGGGATTATTGTGGAGCAGGGTGTCAAAGTGGCCCTTGTGACCCGCCCAACGATGTGTCGGTCTCAAGTATTGTGACTGACGCATTTTTCAGCTGGATTGTTGGTCAATCTGCTACGAGTTGTGTTGGAAAGGGATTTTACACTAGATCGACGTTTCTTGAGGCCATTGATTCGTATCCTCAATTCGGGAGAACTGGGACTGAGGACGATTCTAGGAGGGAAATCGCCGCTTTTTTCGCACATAGCGCTCATGAGACAGGAGGTATATATATATATATATTATTCCGATCTATTCCTCGTTTTTGCTACATAGAGGAGTTGGGTCCTCGTAATGATTACTGTGACGAGACGAGTACATTGTATCCATGTGCACCCAATAAGAGCTACTATGGTCGAGGTCCTCTGCAGCTCTCATGGAACTTCAATTACGGAGCAGCTGGAAAGATGATCGGTTTGGACTTACTAAACGAGCCCGAAATTGTGGCCACCGATGTGGTTGTCTCCTTCAAAGCCACCTTGTGGTTTTGGATGAGAAGCGTTCACTCTATCCTAACTTCTGGACAAGGGTTTGGCGCAACCATTAATGCTATTAACGGTCAACTTGAATGCAATAATGGTCCAAACTCTGGTGCTGCTACGAATCGCGCTGATTATTACACAAGATTTTGTGGTCAACTTGGTGTTTTGCCTGGCGAAAATCTACTATGTTCAAGGGCCAATGGCACCACTATTGATGGACCTTATATTCCCACCGATTATATTTTATTGAATTGTGGCTCAAAGTCAAACAAAATTTCAGTAGATGGCCGAGAGTGGGCTGGGGATGCCTCGTCACAATTCACACAGTCGAGCACGAACACAAGCATATCGTTTGCATCAAACGCCTCGGAAAAAGATCCTTCTGTCACCCAAGTCCCTTACATGACAGCCCGTATCTTTAGGGGATCTCCCTTCACCTACAATTTCCATCTATCCGCCGGCCCAAAATTTGTCCGTCTTTACTTCTACTCGGCTACCTACTCTGGCTTGGACAAGTCAAAATCCTTATTTTCTGTAAAATTCGGCGGCTACACTCTCCTAAAAAACTTTAGTGCTTCTCTTACCATAGCTGTTTTAGAACCTCCAGTGCCCTTTTTTGTCAAAGAATTCATCCTCCACGTTAATGATAACATACTCAACCTAACATTTTCAGCCATGTCCCCTGAATCTTTTGGTTTTGTCAATGGCATCGAGATAGTTTCCATGCCAGAGAATCTTTATATACTTGGCAATAGTAATCCCATACCACTCATTGGCCAGAATACTGATTCTTTTATTTCTAATGACACAGCCCTCGAAACTCTTTACCGGTTAAACATTGGGGGGAATAACATTCCTGTAGCGTTGGATACTGGTATGTTTCGCTCTTGGTTTAATGATGATGACTATATAAAAAGCGAGGATCATGGGTATAAGCTTGAGGGAGTTTTCTTGATCAATTATACATCGGACACACCGCCTTACACTGCACCAGAGATTATCTATAATACCTCAAGGACTTCAATACACAACTTGACTTGGCATTTTACTGTTGATGCTGGGTTCAATTATCTCCTCAGACTCCATTTCTGTGAGTCTCAGTTGGAGGTAACACGTATAAATCAACGGGTCTTTTCGATATTCATCAACAATCAAATAGCAGAGAAAGATGCTGATATAATGGCGTGGACTGGTGGAAATGGAATTCCCGTGTTCAAGGACTATATAGCGTTGGTTCCGAATCCATTAAATGGCATAAGTAAGCAGAAGTTGTCGCTCACCATGGATCCTCGTTCCTTCAAACACACTCCCAACTCTAGTGATGTTATCTTGAACGGCTTAGAGATCTTCAAGTTGAGCGGATCCGACAATAGTCTTGCTGGCCGTAATCCTGAAGTATATCTTACACCATCGTCACAAAGGAAACGAAAGACTAAACGGTTATTAAAGTTTGGGGTAGTTCTTGGTGGAGGAATAGCAGCATTATCAATTTTGAGTTACTTGGTTTTTCGGCGATGGCGGAAAGCTAATTTAACCGATACCAAGTTGGACCCAATCGGGCCCACGAAATTAAGCCCTTCGTTCTTACCATCAAATATCCGGCACTTTTCACTTACTGAAATCAAATATAGTACTAGAAACTTCGATGAAAATCTTGTCATCGGCGTTGGAGGATTTGGCAATGTTTATAAAGGCTACATAGACAACGGTGCAATAACCGTTGCGATCAAGCGGCTGAATGCTTCGTCTCATCAAGGTATTCGTGAGTTTGAAACAGAGATTGAAATGCTATCCAAACTACGACATCTTCATCTTGTGTCCCTAATTGGGTACTGTAAAGATAATGGGGAAATGGTATTGGTGTATGATTATATGGCTAACGGTACGTTACGATCCCATTTTTGCAAGCCGAATAATCCTTTATCATGGAAGCATCGCCTTCAAATATGTATCGGATCTGCGAGGGGACTACAATATCTTCATACGAGTTCGAAGAATAGAATTATTCACCGTGACGTGAAGTCCACAAACATTTTGCTAGACGAAAGATGGGTAGCGAAAGTCTCTGATTTTGGTTTGTCCAAGATAGGACCCACCGGTGTGTCTCACACCCATGTGAGCACCATGGTTAAAGGTAGTTTTGGGTACATGGACCCTGAGTACTATCGGCTACAAAGATTGACAGATAAGTCTAACGTGTACTCGTTTGGGGTGGTTTTATTCGAAGTGTTATCCGGTAAGCCAGCAATTATTGAAGACATACCTGAGGAGCCAGTGAATTTGGCCGAGTGGGCTCGATCTTGTTATAAAACGGGGGCCCTTGATGAAATTATTGATCTTCATGTAGTGGATGAGATTGCACCAGAATGTTTAAAGAAGTTTGCCGATGTAGCTTATAGTTGTGTCCAAGAACAAGGGATCAATAGATCATCAATGAGTGACGTGGTTTGGAGTTTGGAGCTTGCATTGCAACTTCAAGAGGCTGCTGAGAATATGAGTGCTAATGGAGCTGCACTTGAGACCGTAGAAAATTTCACGAATTTACCTTTCCATCTTAAAGAGGATGCCTTAACAGAGCATAATGAGAACTTGTCTGGGTCGATTGAATTAGCAGGCAACTCTAGAAGTAGTATGTCATTGCCGAGTAACAACTGA

Network for GWHGAAZE023147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	80	285	4.90E-53
PF12819.8	Malectin_like	305	673	3.90E-37
PF07714.18	PK_Tyr_Ser-Thr	775	1038	1.40E-45

Protein Sequence

>GWHPAAZE023163
MRHNYNLLAKFIILAGVLAGASPELVLSQGQCGCASTDCCSKYGYCGQGGDYCGAGCQSGPCDPPNDVSVSSIVTDAFFSWIVGQSATSCVGKGFYTRSTFLEAIDSYPQFGRTGTEDDSRREIAAFFAHSAHETGGIYIYILFRSIPRFCYIEELGPRNDYCDETSTLYPCAPNKSYYGRGPLQLSWNFNYGAAGKMIGLDLLNEPEIVATDVVVSFKATLWFWMRSVHSILTSGQGFGATINAINGQLECNNGPNSGAATNRADYYTRFCGQLGVLPGENLLCSRANGTTIDGPYIPTDYILLNCGSKSNKISVDGREWAGDASSQFTQSSTNTSISFASNASEKDPSVTQVPYMTARIFRGSPFTYNFHLSAGPKFVRLYFYSATYSGLDKSKSLFSVKFGGYTLLKNFSASLTIAVLEPPVPFFVKEFILHVNDNILNLTFSAMSPESFGFVNGIEIVSMPENLYILGNSNPIPLIGQNTDSFISNDTALETLYRLNIGGNNIPVALDTGMFRSWFNDDDYIKSEDHGYKLEGVFLINYTSDTPPYTAPEIIYNTSRTSIHNLTWHFTVDAGFNYLLRLHFCESQLEVTRINQRVFSIFINNQIAEKDADIMAWTGGNGIPVFKDYIALVPNPLNGISKQKLSLTMDPRSFKHTPNSSDVILNGLEIFKLSGSDNSLAGRNPEVYLTPSSQRKRKTKRLLKFGVVLGGGIAALSILSYLVFRRWRKANLTDTKLDPIGPTKLSPSFLPSNIRHFSLTEIKYSTRNFDENLVIGVGGFGNVYKGYIDNGAITVAIKRLNASSHQGIREFETEIEMLSKLRHLHLVSLIGYCKDNGEMVLVYDYMANGTLRSHFCKPNNPLSWKHRLQICIGSARGLQYLHTSSKNRIIHRDVKSTNILLDERWVAKVSDFGLSKIGPTGVSHTHVSTMVKGSFGYMDPEYYRLQRLTDKSNVYSFGVVLFEVLSGKPAIIEDIPEEPVNLAEWARSCYKTGALDEIIDLHVVDEIAPECLKKFADVAYSCVQEQGINRSSMSDVVWSLELALQLQEAAENMSANGAALETVENFTNLPFHLKEDALTEHNENLSGSIELAGNSRSSMSLPSNN

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0006468	biological_process	protein phosphorylation
GO:0004568	molecular_function	chitinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0008061	molecular_function	chitin binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.042
	SRR3591706	second leaf	0.427
	SRR3591707	mature leaf	0.659
	SRR3591708	Shoot apex	0.530
	SRR3591709	Stem	0.073
	SRR3591710	White floral bud	0.244
	SRR3591711	White flower	0.447
	SRR3591712	Green floral bud	1.789
	SRR3591713	Yellow flower	0.083
SRP173429	SRR8316895	Juvenile bud stage	0.045
	SRR8316896	Juvenile bud stage	0.160
	SRR8316897	Juvenile bud stage	0.476
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.052
	SRR8316901	Third green stage	0.078
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.013
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.003
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.025
SRP132670	SRR6706286	Control	0.145
	SRR6706287	Light intensity 50%	0.177
	SRR6706288	Light intensity 20%	0.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.079
	CNS0095593	Slightly white alabastrum(diploid) 2	0.045
	CNS0095594	Slightly white alabastrum(diploid) 3	0.083
	CNS0095595	Whole white alabastrum(diploid) 2	0.026
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.051
	CNS0095598	Silvery flower (diploied) 1	0.371
	CNS0095599	Silvery flower (diploied) 2	0.067
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.335
	CNS0095602	Golden flower (diploid) 2	0.049
	CNS0095603	Golden flower (diploid) 3	0.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.062
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.247
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.190
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.077
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.071
	CRR073298	Stem 2	0.035
	CRR073299	Stem 3	0.109
	CRR073300	Leaf 1	0.020
	CRR073301	Leaf 2	0.075
	CRR073302	Leaf 3	0.020
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.041
	CRR073306	Third green 1	0.090
	CRR073307	Third green 2	0.058
	CRR073308	Third green 3	0.024
	CRR073309	Second white 1	0.047
	CRR073310	Second white 2	0.031
	CRR073311	Second white 3	0.015
	CRR073312	Silver flowering 1	0.034
	CRR073313	Silver flowering 2	0.009
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.059
	CRR073316	Gold flowering 2	0.148
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.117
	CRR073319	Tawny withering 2	0.294
	CRR073320	Tawny withering 3	0.000