Gene detail

Detail information of GWHGAAZE023136

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABJ74186.1	1.44143E-88	chitinase-like protein [Artemisia annua]
COG	YP_003513618.1	8E-33	chitinase
Swissprot	tr\|Q6K8R2\|CHI6_ORYSJ	1E-77	Chitinase 6 (Precursor)
trEMBL	tr\|A0A3A1\|A0A3A1_ARTAN	5E-89	Chitinase-like protein {ECO:0000313\|EMBL:ABJ74186.1} (Fragment)
TAIR10	AT3G54420.1	1E-64	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	203968	206961	-
GWHAAZE00000007	mRNA	203968	206961	-
GWHAAZE00000007	exon	203968	204398	-
GWHAAZE00000007	exon	204744	205031	-
GWHAAZE00000007	exon	205822	206237	-
GWHAAZE00000007	exon	206690	206961	-
GWHAAZE00000007	CDS	206690	206961	-
GWHAAZE00000007	CDS	205822	206237	-
GWHAAZE00000007	CDS	204744	205031	-
GWHAAZE00000007	CDS	203968	204398	-

Transcript Sequence
>GWHTAAZE023166 ATGAGAGACAATTATAATTTGCTAGCCAAATTCATCATTTTGGCCAGAGTTCTCGCCGGAGTCTTGCCAGACAATGTGTCGGTCTCAAGTATTGTGACTGACGAATTTTTCAGCGGGGTCGTTAATCAATCTGATGCGAGTTGTGATGGAAGGAGATTTTACACTAGATTGGCGTTTCTTGAGGCCATTGGTTCGTATCCTCGATTCGGGAGAACTGGGACTGAGGACGATTCTAGGAGGGAAATCGCTGCTTTTTTCGCACATAGCACTGAGTTTTGCTTCATAGAGACGGACGGTCCTAGAAATGATAACTGTGACGAGACGAATACAGCGTATCCATGTGCACGCAATAAGAGCTACTACGGTCGAGGTCCTCTTCAGCTCGCATGGAACTACAATTACGGACCAGCTGGAGAGAGCAACGGTTTTGACGGACTAAACAACCCCGAAATCGTGGCCACCAATGCCGTTATCTGCTTCAGAGCCTCCTTGTGGTATTGGATGACAAACGTTCACTCTATCATGACTTCTGGACAAGGGTTTGGCGCAACCATTAATGCTATTTACGGTGATGAACAAGAATGCAATAATAGTCAAAACTCTGGTGCTGCTACTAGACGCGTTGATTATTACACAGGATTTTGTAGCCAACTTGGTGTTTCGCCTGGCGAAAATCTACAATGTTCAGATATTCGGCTTTTTTCACTTGCTGAAATTAAATCTTGTACTAACAACTTTGACGACAATCTTGTGCTCGGTGTTGGAGGATTTGGCAAGGTGTATAAAGGTTGTATAGACAACAGTGCAACTATCGTTGCGATCAAGCGTTTGAACGTTTCGTCTCATCAAGGAATTCGTGAGTTTGAAACAGAGATTGAAATGCTATCCAAACTACGACATCTTCATCTTGTGTCCCTAATTGGATGCTGCGAGGATAATGGGGAAATGGTATTGGTCTATGATTATATGGCTAATGTGTTATCCGGTAAGCCAGCGATTATTGAAGACATACCTGAGGAGCCGGTGAATTTGGCCGAGTGGGCTCAATGTTGTTATAAAACGGGGGCCCTTGATGAAATTATTGATCTTCATGTACTGGACGAGATTGCACCAGAATGTTTAAAGAAGTTTGCCGATGTAGCTTATAGTTGCGTCCAAGAACAAGGGATCAATAGACCATCAATGAGTGATGTGGTTTGGAGTTTGGAGCTTGCATTACAACTTCAAGAGACTGCTGAGAATATGAGTGCTAATGGAGCTGCACTTGAGACCTTAGAAAATTTCATGAATTTACCTTTCCATCTTAGAGAGGATGCCTTAACAGAGCATAATAAGAGCTTATTTGGGTGGTCTATAGAATTAGCAAGCAGCTCGGGAAGTAGTATGTCATTACCGAGTAATAACTAA

Network for GWHGAAZE023136

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00182.20	Glyco_hydro_19	31	171	2.60E-33
PF00069.26	Pkinase	251	325	2.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.066
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.037
	SRR3591708	Shoot apex	0.148
	SRR3591709	Stem	0.020
	SRR3591710	White floral bud	0.073
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.222
	SRR3591713	Yellow flower	0.052
SRP173429	SRR8316895	Juvenile bud stage	0.067
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.093
	SRR8316894	Third green stage	0.048
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.205
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.001
SRP132670	SRR6706286	Control	0.185
	SRR6706287	Light intensity 50%	0.037
	SRR6706288	Light intensity 20%	0.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.080
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.082
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.309
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.038
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.018
	CNS0095613	Golden flower (tetraploid) 1	0.026
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.018
	CRR073298	Stem 2	0.030
	CRR073299	Stem 3	0.019
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.005
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.003
	CRR073307	Third green 2	0.031
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.012
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.004
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000