Detail information of GWHGAAZE023130


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283468.10PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera]
Swissprottr|Q9FKS8|LHT1_ARATH2E-15Lysine histidine transporter 1
trEMBLtr|D7SXA8|D7SXA8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22205.3}
TAIR10AT3G28960.11E-108Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene8442286976-
GWHAAZE00000007mRNA8442286976-
GWHAAZE00000007exon8442284937-
GWHAAZE00000007exon8540685974-
GWHAAZE00000007exon8680586976-
GWHAAZE00000007CDS8680586976-
GWHAAZE00000007CDS8540685974-
GWHAAZE00000007CDS8442284937-
Transcript Sequence

Network for GWHGAAZE023130

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans422153.90E-27
PF01490.19Aa_trans2484101.60E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K15015SLC32A, VGAT GABAergic synapse map04727
Retrograde endocannabinoid signalingmap04723
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.598
SRR3591706second leaf0.534
SRR3591707mature leaf0.327
SRR3591708Shoot apex0.900
SRR3591709Stem0.273
SRR3591710White floral bud0.815
SRR3591711White flower4.645
SRR3591712Green floral bud1.255
SRR3591713Yellow flower4.287
SRP173429 SRR8316895Juvenile bud stage 0.520
SRR8316896Juvenile bud stage 0.060
SRR8316897Juvenile bud stage 0.676
SRR8316894Third green stage 0.026
SRR8316900Third green stage 0.522
SRR8316901Third green stage 0.396
SRR8316898Complete white stage 0.933
SRR8316899Complete white stage 4.030
SRR8316903Complete white stage 1.135
SRR8316902Silver flowering stage25.274
SRR8316904Silver flowering stage44.521
SRR8316905Silver flowering stage24.523
SRR8316906Gold flowering stage 65.197
SRR8316907Gold flowering stage 78.055
SRR8316908Gold flowering stage 50.876
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.025
SRR6706288Light intensity 20%0.016
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.454
CNS0095593Slightly white alabastrum(diploid) 20.214
CNS0095594Slightly white alabastrum(diploid) 30.565
CNS0095595Whole white alabastrum(diploid) 20.294
CNS0095596Whole white alabastrum(diploid) 30.363
CNS0095597Whole white alabastrum(diploid) 40.181
CNS0095598Silvery flower (diploied) 10.613
CNS0095599Silvery flower (diploied) 21.414
CNS0095600Silvery flower (diploied) 34.804
CNS0095601Golden flower (diploid) 11.278
CNS0095602Golden flower (diploid) 24.038
CNS0095603Golden flower (diploid) 32.930
CNS0095604Slightly white alabastrum(tetraploid) 10.067
CNS0095605Slightly white alabastrum(tetraploid) 20.184
CNS0095606Slightly white alabastrum(tetraploid) 30.129
CNS0095607Whole white alabastrum(tetraploid) 10.619
CNS0095608Whole white alabastrum(tetraploid) 20.275
CNS0095609Whole white alabastrum(tetraploid) 30.377
CNS0095610Silvery flower (tetraploid) 11.830
CNS0095611Silvery flower (tetraploid) 22.764
CNS0095612Silvery flower (tetraploid) 394.139
CNS0095613Golden flower (tetraploid) 110.183
CNS0095614Golden flower (tetraploid) 22.694
CNS0095615Golden flower (tetraploid) 316.600
CRA001975CRR073297Stem 10.323
CRR073298Stem 20.430
CRR073299Stem 30.585
CRR073300Leaf 10.215
CRR073301Leaf 20.121
CRR073302Leaf 30.364
CRR073303Juvenile bud 10.150
CRR073304Juvenile bud 20.288
CRR073305Juvenile bud 30.231
CRR073306Third green 1163.264
CRR073307Third green 297.534
CRR073308Third green 396.411
CRR073309Second white 1379.280
CRR073310Second white 2280.517
CRR073311Second white 3266.220
CRR073312Silver flowering 1205.962
CRR073313Silver flowering 2258.006
CRR073314Silver flowering 3167.327
CRR073315Gold flowering 10.031
CRR073316Gold flowering 20.599
CRR073317Gold flowering 30.258
CRR073318Tawny withering 10.250
CRR073319Tawny withering 21.416
CRR073320Tawny withering 30.005