Gene detail

Detail information of GWHGAAZE023042

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13327.1	0	unnamed protein product [Coffea canephora]
COG	YP_002433868.1	2E-26	hypothetical protein Dalk_4722
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	2E-153	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|A0A068UYE9\|A0A068UYE9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13327.1}
TAIR10	AT1G67510.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82455466	82458888	+
GWHAAZE00000006	mRNA	82455466	82458888	+
GWHAAZE00000006	exon	82455466	82456987	+
GWHAAZE00000006	exon	82457391	82457400	+
GWHAAZE00000006	exon	82458249	82458888	+
GWHAAZE00000006	CDS	82455466	82456987	+
GWHAAZE00000006	CDS	82457391	82457400	+
GWHAAZE00000006	CDS	82458249	82458888	+

Transcript Sequence
>GWHTAAZE023072 ATGTTGAAACTCTATTTTAATTACCTTTTCTCATTTCTCTTCATTTATCTGCATTCTCTTCTTACTCCTCATCATGTATTTTCTCTCTCCACCGACGGCCTCTCTCTCCTCTCTCTCAAATCCGCCGTCGACAGCGGCGACTCCATCTTCTCCGACTGGAACGAGAACGATGACAATCCATGCCAATGGGCCGGAATCTCCTGCATGAACATCTCCGGTTCTTCCGAACCTCGAGTCATCGGTGTTGCCGTCTCCGGGCAGAATCTCCGGGGATACATTCCATCGGAGCTCGGAACCCTTGTGTACCTCCGGCGACTCAACCTCCACGGAAACAATCTCTACGGCTCAATTCCTGATGAGCTCTTCAATGCTTCCTCACTCCACAGTGTTTATCTCTACGGTAACAATCTCTCTGGTCCTTTACCTACTTCCGTTTGCAATATCCCTAGGTTACAAAACCTAGATTTCTCCAACAATTCGCTCTCCGGAACGATCCCTAGGGATCTTCGGAATTGCCGGCAGTTGCAGCGGTTGATTCTTGCATCAAACAAGTTTTCCGGAGAGATTCCGGAAGGAATTTTCCCAGGGTTGGCAAATTTGGTTCAGCTTGATCTCTCGTCCAATTTACTTAATGGATCAGTCCCTGAAGATATAGGGGAGTTGAAATCCTTGTCAGGAACTCTCAATTTCTCTTACAATCACTTGTCTGGAAAAATCCCCAAGTCATTGGGGGATTTGCCACTGACTGTGAGCTTTGATCTTCGAAACAATAATTTTAACGGAGAAATACCTCAGACCGGTTCACTTGCGAACCAAGGTCCGACTGCGTTTCTCAATAATCCACAACTGTGCGGATTCCCTCTCCAAAGCCCTTGCCGGAGTGATTCAGACAGTCCTCCGGGAATCCCGAATTCATCGCCGGAATCTGACAATGGTAATACTAGGAAAGGACTAAAGCCAGGTTTGATCATACTAATTGCAGTGGCTGATGCTATTGGAGTGGCATTGATTGGCCTAGTTATTGTTTATGTGTATTGGAAGAGGAAGGATTCTCACATGAGCTGTAGCTGCACTTGCAGAGGAAAATTTGGTGGCAATGAGAAAAGAAAATTGTGTTTGTTTCCTTGCATTAGGGGGTTTCCAGGGAATGATTCGGATGTGGATTCCGAAAAAGGTGGAGGTAGTGGTGGTGGTGGTGGAGGTGAAGGTGATCTTGTGGCTATTGATAAAGGTTTTAGTTTTGAGCTAGACGAGCTATTGAGAGCATCGGCTTACGTGTTGGGAAAGAGTGGGTTGGGGATTGTGTATAAGGTTGTGCTCGGCAATGGGGTGCCAGTGGCAGTGAGGAGGTTGGGGGAAGGGGGTGAACAACGATACAAGGAATTCGTGGCGGAGATTCAGGCGATTGGGAGGGTAAAGCATCCAAATGTGGTCAAGTTAAGGGCTTATTACTGGGCTCCTGACGAGAAGCTTCTCATTAGTGATTTCATTTCCAATGGTAACTTGGCTTCTGCTCTTCGGGTTGAGAAAAGGGAAAACTGGTCAGCCATCATCAAGCCTCTTATGGTCAACCAGGCTGAAAATAGCAAAGGGAACGGCTCGGGATTAGCCTATCTTCATGAATGTAGTCCAAGGAAATTTGTACATGGAGACATCAAACCATCCAACATTCTCCTAGATAACGAATATCAACCGTACATTTCTGATTTTGGGCTCAACCGTTTGATCAGCATAACAGGCAACAACCCCTCCTCTTCTGGTGGATTTATGGGTGGGGCCCTTCCTTATTTAAAATCAGTCCAACCAGAGCGGGCCAACAACTACCGAGCACCAGAGGCTCGTGTCCCTACCAACCGGCCTGCCCAAAAATGGGATGTCTACTCATTTGGAGTTGTCTTACTTGAATTGCTCACTGGAAAATCTCCAGAACTTTCGTCTCCAACCACATCTACTTCCACAGAAATCCAAGATTTAGTTAGGTGGGTAAGGAAAGGATTCGAAGAGGAACACCCCATATCAGATATAGTGGACCCCATGTTACTTCAAGAAGTACATGCCAAGAAGGACGTTCTAGCTATGTTTCATATAGCCCTTGGGTGCACCGAGAGTGACCCCGAGGTTCGGCCCAGGATGAAAACCGTCTCTGAAAATCTTGAGAGGATTGGAACATAA

Network for GWHGAAZE023042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	30	68	7.40E-09
PF13855.7	LRR_8	173	224	4.90E-07
PF04689.14	S1FA	314	347	0.0002
PF00069.26	Pkinase	426	710	3.70E-29

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	S1Fa-like
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.620
	SRR3591706	second leaf	15.724
	SRR3591707	mature leaf	8.633
	SRR3591708	Shoot apex	6.246
	SRR3591709	Stem	24.970
	SRR3591710	White floral bud	2.227
	SRR3591711	White flower	1.453
	SRR3591712	Green floral bud	10.346
	SRR3591713	Yellow flower	0.294
SRP173429	SRR8316895	Juvenile bud stage	5.158
	SRR8316896	Juvenile bud stage	7.450
	SRR8316897	Juvenile bud stage	3.034
	SRR8316894	Third green stage	3.904
	SRR8316900	Third green stage	9.048
	SRR8316901	Third green stage	8.368
	SRR8316898	Complete white stage	0.359
	SRR8316899	Complete white stage	5.983
	SRR8316903	Complete white stage	1.055
	SRR8316902	Silver flowering stage	0.252
	SRR8316904	Silver flowering stage	0.075
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.076
	SRR8316907	Gold flowering stage	0.242
	SRR8316908	Gold flowering stage	0.130
SRP132670	SRR6706286	Control	11.888
	SRR6706287	Light intensity 50%	12.574
	SRR6706288	Light intensity 20%	15.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.876
	CNS0095593	Slightly white alabastrum(diploid) 2	2.959
	CNS0095594	Slightly white alabastrum(diploid) 3	1.376
	CNS0095595	Whole white alabastrum(diploid) 2	2.066
	CNS0095596	Whole white alabastrum(diploid) 3	1.411
	CNS0095597	Whole white alabastrum(diploid) 4	1.289
	CNS0095598	Silvery flower (diploied) 1	3.683
	CNS0095599	Silvery flower (diploied) 2	3.307
	CNS0095600	Silvery flower (diploied) 3	1.427
	CNS0095601	Golden flower (diploid) 1	2.672
	CNS0095602	Golden flower (diploid) 2	2.297
	CNS0095603	Golden flower (diploid) 3	1.493
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.657
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.461
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.301
	CNS0095610	Silvery flower (tetraploid) 1	0.506
	CNS0095611	Silvery flower (tetraploid) 2	1.300
	CNS0095612	Silvery flower (tetraploid) 3	0.367
	CNS0095613	Golden flower (tetraploid) 1	0.191
	CNS0095614	Golden flower (tetraploid) 2	0.531
	CNS0095615	Golden flower (tetraploid) 3	0.058
CRA001975	CRR073297	Stem 1	11.120
	CRR073298	Stem 2	8.875
	CRR073299	Stem 3	11.267
	CRR073300	Leaf 1	6.503
	CRR073301	Leaf 2	7.359
	CRR073302	Leaf 3	6.475
	CRR073303	Juvenile bud 1	4.264
	CRR073304	Juvenile bud 2	2.165
	CRR073305	Juvenile bud 3	5.156
	CRR073306	Third green 1	0.180
	CRR073307	Third green 2	0.219
	CRR073308	Third green 3	0.269
	CRR073309	Second white 1	0.018
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.082
	CRR073312	Silver flowering 1	0.050
	CRR073313	Silver flowering 2	0.253
	CRR073314	Silver flowering 3	0.104
	CRR073315	Gold flowering 1	2.444
	CRR073316	Gold flowering 2	3.246
	CRR073317	Gold flowering 3	3.282
	CRR073318	Tawny withering 1	16.269
	CRR073319	Tawny withering 2	4.435
	CRR073320	Tawny withering 3	20.236