Detail information of GWHGAAZE023032


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265505.10PREDICTED: lipoxygenase 6, chloroplastic [Vitis vinifera]
Swissprottr|Q9CAG3|LOX6_ARATH0Lipoxygenase 6, chloroplastic (Precursor)
trEMBLtr|D7TAQ3|D7TAQ3_VITVI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT1G67560.10PLAT/LH2 domain-containing lipoxygenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8228683882291135-
GWHAAZE00000006mRNA8228683882291135-
GWHAAZE00000006exon8228683882287597-
GWHAAZE00000006exon8228770782287973-
GWHAAZE00000006exon8228808082288381-
GWHAAZE00000006exon8228856282288669-
GWHAAZE00000006exon8228876582288850-
GWHAAZE00000006exon8228907682289327-
GWHAAZE00000006exon8228942382289660-
GWHAAZE00000006exon8228975382290030-
GWHAAZE00000006exon8229070082291135-
GWHAAZE00000006CDS8229070082291135-
GWHAAZE00000006CDS8228975382290030-
GWHAAZE00000006CDS8228942382289660-
GWHAAZE00000006CDS8228907682289327-
GWHAAZE00000006CDS8228876582288850-
GWHAAZE00000006CDS8228856282288669-
GWHAAZE00000006CDS8228808082288381-
GWHAAZE00000006CDS8228770782287973-
GWHAAZE00000006CDS8228683882287597-
Transcript Sequence

Network for GWHGAAZE023032

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00305.20Lipoxygenase2493971.70E-52
PF00305.20Lipoxygenase4018911.00E-248
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00454LOX2S Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Linoleic acid metabolismmap00591
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005515molecular_functionprotein binding
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.994
SRR3591706second leaf14.843
SRR3591707mature leaf22.115
SRR3591708Shoot apex23.945
SRR3591709Stem41.302
SRR3591710White floral bud15.317
SRR3591711White flower15.630
SRR3591712Green floral bud14.306
SRR3591713Yellow flower14.533
SRP173429 SRR8316895Juvenile bud stage 12.494
SRR8316896Juvenile bud stage 16.654
SRR8316897Juvenile bud stage 4.918
SRR8316894Third green stage 5.431
SRR8316900Third green stage 14.068
SRR8316901Third green stage 13.052
SRR8316898Complete white stage 5.762
SRR8316899Complete white stage 16.411
SRR8316903Complete white stage 10.840
SRR8316902Silver flowering stage6.822
SRR8316904Silver flowering stage9.700
SRR8316905Silver flowering stage4.764
SRR8316906Gold flowering stage 18.791
SRR8316907Gold flowering stage 16.160
SRR8316908Gold flowering stage 21.102
SRP132670SRR6706286Control14.879
SRR6706287Light intensity 50%14.408
SRR6706288Light intensity 20%14.195
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.531
CNS0095593Slightly white alabastrum(diploid) 26.884
CNS0095594Slightly white alabastrum(diploid) 36.180
CNS0095595Whole white alabastrum(diploid) 23.804
CNS0095596Whole white alabastrum(diploid) 33.616
CNS0095597Whole white alabastrum(diploid) 42.693
CNS0095598Silvery flower (diploied) 19.242
CNS0095599Silvery flower (diploied) 210.407
CNS0095600Silvery flower (diploied) 318.170
CNS0095601Golden flower (diploid) 111.046
CNS0095602Golden flower (diploid) 221.414
CNS0095603Golden flower (diploid) 320.856
CNS0095604Slightly white alabastrum(tetraploid) 16.123
CNS0095605Slightly white alabastrum(tetraploid) 24.704
CNS0095606Slightly white alabastrum(tetraploid) 319.013
CNS0095607Whole white alabastrum(tetraploid) 13.107
CNS0095608Whole white alabastrum(tetraploid) 22.005
CNS0095609Whole white alabastrum(tetraploid) 311.175
CNS0095610Silvery flower (tetraploid) 128.443
CNS0095611Silvery flower (tetraploid) 224.632
CNS0095612Silvery flower (tetraploid) 331.236
CNS0095613Golden flower (tetraploid) 117.325
CNS0095614Golden flower (tetraploid) 233.469
CNS0095615Golden flower (tetraploid) 335.266
CRA001975CRR073297Stem 116.587
CRR073298Stem 215.579
CRR073299Stem 314.755
CRR073300Leaf 113.624
CRR073301Leaf 213.836
CRR073302Leaf 313.477
CRR073303Juvenile bud 19.913
CRR073304Juvenile bud 217.732
CRR073305Juvenile bud 315.980
CRR073306Third green 123.096
CRR073307Third green 27.021
CRR073308Third green 316.119
CRR073309Second white 113.182
CRR073310Second white 213.420
CRR073311Second white 316.107
CRR073312Silver flowering 116.345
CRR073313Silver flowering 218.463
CRR073314Silver flowering 316.576
CRR073315Gold flowering 116.073
CRR073316Gold flowering 219.137
CRR073317Gold flowering 320.912
CRR073318Tawny withering 145.941
CRR073319Tawny withering 231.519
CRR073320Tawny withering 334.448