Gene detail

Detail information of GWHGAAZE023024

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13153.1	0	unnamed protein product [Coffea canephora]
COG	YP_005072047.1	3E-32	type II DNA modification methyltransferase
Swissprot	tr\|Q9AXT8\|CMT1_MAIZE	0	DNA (cytosine-5)-methyltransferase 1
trEMBL	tr\|A0A068UZW0\|A0A068UZW0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_73 {ECO:0000313\|EMBL:CDP13153.1}
TAIR10	AT1G69770.1	0	chromomethylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82186529	82194309	+
GWHAAZE00000006	mRNA	82186529	82194309	+
GWHAAZE00000006	exon	82186529	82186918	+
GWHAAZE00000006	exon	82187043	82187071	+
GWHAAZE00000006	exon	82187178	82187277	+
GWHAAZE00000006	exon	82188105	82188212	+
GWHAAZE00000006	exon	82188302	82188421	+
GWHAAZE00000006	exon	82188507	82188606	+
GWHAAZE00000006	exon	82188693	82188886	+
GWHAAZE00000006	exon	82189069	82189134	+
GWHAAZE00000006	exon	82189251	82189508	+
GWHAAZE00000006	exon	82190801	82190859	+
GWHAAZE00000006	exon	82190942	82191008	+
GWHAAZE00000006	exon	82191103	82191432	+
GWHAAZE00000006	exon	82191517	82191585	+
GWHAAZE00000006	exon	82191670	82191756	+
GWHAAZE00000006	exon	82191844	82191931	+
GWHAAZE00000006	exon	82192232	82192350	+
GWHAAZE00000006	exon	82192436	82192540	+
GWHAAZE00000006	exon	82193120	82193163	+
GWHAAZE00000006	exon	82193271	82193444	+
GWHAAZE00000006	exon	82193914	82194309	+
GWHAAZE00000006	CDS	82186529	82186918	+
GWHAAZE00000006	CDS	82187043	82187071	+
GWHAAZE00000006	CDS	82187178	82187277	+
GWHAAZE00000006	CDS	82188105	82188212	+
GWHAAZE00000006	CDS	82188302	82188421	+
GWHAAZE00000006	CDS	82188507	82188606	+
GWHAAZE00000006	CDS	82188693	82188886	+
GWHAAZE00000006	CDS	82189069	82189134	+
GWHAAZE00000006	CDS	82189251	82189508	+
GWHAAZE00000006	CDS	82190801	82190859	+
GWHAAZE00000006	CDS	82190942	82191008	+
GWHAAZE00000006	CDS	82191103	82191432	+
GWHAAZE00000006	CDS	82191517	82191585	+
GWHAAZE00000006	CDS	82191670	82191756	+
GWHAAZE00000006	CDS	82191844	82191931	+
GWHAAZE00000006	CDS	82192232	82192350	+
GWHAAZE00000006	CDS	82192436	82192540	+
GWHAAZE00000006	CDS	82193120	82193163	+
GWHAAZE00000006	CDS	82193271	82193444	+
GWHAAZE00000006	CDS	82193914	82194076	+
GWHAAZE00000006	three_prime_UTR	82194077	82194309	+

Transcript Sequence
>GWHTAAZE023054 ATGCCTCCAAAACTTCCGCTTCCCGCCCATTTCCATTATCTCCAAAATTCACACTCCCCCTCGCCCCTTTTAAAACCCCTTTCTCTACACGAGCATATTCTCTCTCTTTCTACCCCTCAATCGACATGGCCAAACGAAAGGGTCCATCCGGAGCTTCTAAATCTGATTCCCCCAAGAGATCAAAGAGCGAAGACGAGTCTGGATCCGAGAATCCATTCAGTAGAAGAACCAGTTGCCAAAAATGAAGCTCCAGCGAGCTCTCCCAGACCTCTGTCTGGGGATAAGCCTCAAACAACTATTGATGATGATACTGAAGATAGTGGATTTGTGGGCGAATCTGTACCTGATGAAGTAGCTCGGAACCGGTGGCCTCATCGCTACAGGGGGGAAGAGAAAGAAACGTCCAACACCCCTAAAATGAAAGATGAAACTGAAGAGAACTTCCAAGCAAAAAGACATTTCGAGCAAGCCCAGGTTGATGGGACTATGTTCAAGCTTGGAGATGACGCACATGTCATGGCAGGGGAAGGAGAAGACAGTTATATCTGTAGGGTTGTGGAAATGTTTGAGGGAGTAGATGGTTCACCTTATTTTACAGCTCAGTGGTTCTATAGAGCCAAAGATACAGTAATTAAGAACTGCAGTGATCTAATAGATGATAAGAGGGTATTCCTTTCTGAAGTGAAAAATGACAACCCATTGGATTGCCTTCTTGAGAAGCTTAGAATTGTTCAATTCACATTAAATGTAGATTTGGATACCAAAAATGCTGCACTTCTAGATTGCCACTATTATTATGACATGATGTACCTGCTGCCATATTCGTCCTTTGTAGCGTTACCACCTGAAGATGTGGAAGGAGGAACTCAATCCGAATCCACCATTTCTAGTGAGGATGATGTCATTGCAACAGCTGGTTGTTCTCCAAATCAAGAGCACAAGAGGTCAGAGATGACACTATTGGACCTATATTCTGGTTGTGGTGGAATGTCTACAGGATTGTGTCTTGGGGCAAACATATCTGGTGTTGATCTAGTCACAAAATGGGCTGTTGATTTTAACTCGCATGCATGTGATAGCCTCAGACTAAACCATCCAGAGACGGAGGTGAGAAATGAAACTGCAGAAGATTTCCTGTCATTGTTGAAGGAGTGGGAAAAACTTTGTGCCTCTTACTCATTGATAGGGAGTAATGATTCAGAACAACAGCATATTTTTCCTAAAAGTACAACTGATGAAGGGGATAGTGATAATGAAGCCAATGATGATGATGAACTTGATCCTGAAGAATTTGAAGTTGAGCAAATTTTGTCCATTCGTTATTGTGAGCCAAAAGAAAGTGCAAAATCTGGGCTGCAACTTAAGATTCGCTGGAAGGGGTATGGACCGGATGAAGATACTTGGGAGCCTATTGAGGGTTTGGGTGATTGTGAGGGGAAGATAAAAGAGTTTGCAATGCATGGATATAATTCAAAGATTCTACCTTTGCCGGGGGATGTTGATGTAGTTTGCGGGGGACCTCCATGTCAGGGCATTAGTGGTTTTAACAGATTTAGGAATACAAAAAATCCTTTACAAGATCCAAAAAATAAACAACTTCTTGTCTTCATGGATATTGTAGAATATTTGAGACCAAAGTTTGTTTTAATGGAGAATGTTGTGGACATACTCAAGTTCGCTAATGGGTTTCTTGGGAGATATGGTTTAGGGCGTCTTGTTGGCATGAATTATCAAGCTAGAATGGGGATGTTGGCAGCTGGTGCATATGGACTCCCACAATTTCGAATGCGTATGTTTATGTGGGGTGCTTGTCACACACAGAAGCTTCCTCAGTACCCATTGCCCACTCATAATGTTGTTGTGAGGGGAAATATTCCTGTTGAATTTCAGTTAAACGGTGTTGCTTATGAAGAAGGTATTAACGTGGATTTGGAAAGGGAGCTCTTTCTTGGAGATGCAATTTCTGACTTGCCTCCAGTAGAAAATGATGAAACACGAGATGAAATGCCCTATGTGGATGCACCAGAGACAGAATTTCAAAAGTTCATTAGACTGAGGAAAGATGAGATGTTAGGTTTCTTAGCATCAGGCTCAGAACCACTGTCACATGTTCTTTTTGATCATAGACCTCTTCAATTAAATGAGGATGATTATCAACGAACCTGTCAAATTCCAAAGAGAAAGGGTGCCAACTATAGGGATTTACATGGTGTACGGGTGGGTGACAATAACAAAGCTGAATTGGATCCAAATGTGGAAAGGGCGTATTTGCCCTCCAAAAAGCCTTTGGTCCCGGATTATGCACTGAGTTTTGTACACGGGACTTCATTAAAACCCTTTGGTCGATTATGGTGGGATGAGACTGTACCAACCGTAGTTACCAGGGCAGAGCCGCACAATCAAGTAATATTGCATCCACTACAAGATAGGGTTCTAACTATTCGCGAGAATGCTAGATTGCAAGGTTTTCCAGATTATTACAAACTTAATGGCCCTATTAAAGAAAGATATATCCAAGTTGGGAATGCAGTTGCTGTTCCAGTTGCAAGAGCATTGGGTTACTCCTTGGGATTGGCATATAAAGGTTTATGCAATGAAGGCCCTTTGCTTACTCTTCCTAAAAAATTCCCCAACATATTGGAGCACCCTGATGTGGAAGAGATTATTTAAAGTAGTATTTTTTTTGGCGGTTTTTCAATAAGTCAACTTTATCGAAATTTGGAAAAATTGTCTTTAACAATTTGTTGTTCTAGTTCTGTTTGAGGATTGGTTCCGTAGTTATATTTGATCAATAACTTGCTTTTGCAACCTTTTTAGGTGATCAAGTTCCAATAGTTCAACATTTAACTATCACTATAGTGTTGAAAAGCATTTTTCATTGTAATTGCGAATTGTTGTAGCAG

Network for GWHGAAZE023024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	176	279	1.50E-07
PF00385.25	Chromo	431	484	3.10E-11
PF00145.18	DNA_methylase	495	855	7.80E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00558	DNMT1, dcm	Metabolic pathways	map01100
K00558	DNMT1, dcm	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.872
	SRR3591706	second leaf	4.533
	SRR3591707	mature leaf	0.403
	SRR3591708	Shoot apex	66.425
	SRR3591709	Stem	6.565
	SRR3591710	White floral bud	1.361
	SRR3591711	White flower	0.416
	SRR3591712	Green floral bud	2.077
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	6.045
	SRR8316896	Juvenile bud stage	6.149
	SRR8316897	Juvenile bud stage	4.608
	SRR8316894	Third green stage	1.782
	SRR8316900	Third green stage	2.053
	SRR8316901	Third green stage	1.472
	SRR8316898	Complete white stage	0.056
	SRR8316899	Complete white stage	0.948
	SRR8316903	Complete white stage	0.312
	SRR8316902	Silver flowering stage	0.186
	SRR8316904	Silver flowering stage	0.173
	SRR8316905	Silver flowering stage	0.064
	SRR8316906	Gold flowering stage	0.100
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.133
SRP132670	SRR6706286	Control	1.808
	SRR6706287	Light intensity 50%	2.122
	SRR6706288	Light intensity 20%	2.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.675
	CNS0095593	Slightly white alabastrum(diploid) 2	3.415
	CNS0095594	Slightly white alabastrum(diploid) 3	2.893
	CNS0095595	Whole white alabastrum(diploid) 2	1.343
	CNS0095596	Whole white alabastrum(diploid) 3	1.179
	CNS0095597	Whole white alabastrum(diploid) 4	1.016
	CNS0095598	Silvery flower (diploied) 1	2.781
	CNS0095599	Silvery flower (diploied) 2	5.336
	CNS0095600	Silvery flower (diploied) 3	0.965
	CNS0095601	Golden flower (diploid) 1	1.751
	CNS0095602	Golden flower (diploid) 2	1.146
	CNS0095603	Golden flower (diploid) 3	0.764
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.779
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.976
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.631
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.312
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.742
	CNS0095610	Silvery flower (tetraploid) 1	0.252
	CNS0095611	Silvery flower (tetraploid) 2	0.461
	CNS0095612	Silvery flower (tetraploid) 3	0.464
	CNS0095613	Golden flower (tetraploid) 1	0.172
	CNS0095614	Golden flower (tetraploid) 2	0.034
	CNS0095615	Golden flower (tetraploid) 3	0.199
CRA001975	CRR073297	Stem 1	7.517
	CRR073298	Stem 2	6.069
	CRR073299	Stem 3	6.531
	CRR073300	Leaf 1	0.831
	CRR073301	Leaf 2	0.842
	CRR073302	Leaf 3	0.792
	CRR073303	Juvenile bud 1	0.382
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.225
	CRR073306	Third green 1	0.021
	CRR073307	Third green 2	0.399
	CRR073308	Third green 3	0.049
	CRR073309	Second white 1	0.138
	CRR073310	Second white 2	0.028
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.105
	CRR073315	Gold flowering 1	0.054
	CRR073316	Gold flowering 2	0.136
	CRR073317	Gold flowering 3	0.270
	CRR073318	Tawny withering 1	4.978
	CRR073319	Tawny withering 2	3.197
	CRR073320	Tawny withering 3	5.302