Gene detail

Detail information of GWHGAAZE023022

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655353.1	3.5262E-118	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase 4 isoform X1 [Vitis vinifera]
COG	YP_007101108.1	1E-80	3-oxoacyl-(acyl-carrier-protein) reductase
Swissprot	tr\|Q949M3\|FABG3_BRANA	2E-109	3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic (Precursor)
trEMBL	tr\|D7TAP7\|D7TAP7_VITVI	1E-118	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27570.3}
TAIR10	AT1G24360.1	5E-73	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82149420	82158004	-
GWHAAZE00000006	mRNA	82149420	82158004	-
GWHAAZE00000006	exon	82157830	82158004	-
GWHAAZE00000006	exon	82157423	82157469	-
GWHAAZE00000006	exon	82156870	82156911	-
GWHAAZE00000006	exon	82156373	82156453	-
GWHAAZE00000006	exon	82156245	82156290	-
GWHAAZE00000006	exon	82156070	82156164	-
GWHAAZE00000006	exon	82155953	82155985	-
GWHAAZE00000006	exon	82155800	82155880	-
GWHAAZE00000006	exon	82155530	82155623	-
GWHAAZE00000006	exon	82155132	82155223	-
GWHAAZE00000006	exon	82150941	82150969	-
GWHAAZE00000006	exon	82149420	82150071	-
GWHAAZE00000006	CDS	82157830	82158004	-
GWHAAZE00000006	CDS	82157423	82157469	-
GWHAAZE00000006	CDS	82156870	82156911	-
GWHAAZE00000006	CDS	82156373	82156453	-
GWHAAZE00000006	CDS	82156245	82156290	-
GWHAAZE00000006	CDS	82156070	82156164	-
GWHAAZE00000006	CDS	82155953	82155985	-
GWHAAZE00000006	CDS	82155800	82155880	-
GWHAAZE00000006	CDS	82155530	82155623	-
GWHAAZE00000006	CDS	82155132	82155223	-
GWHAAZE00000006	CDS	82150941	82150969	-
GWHAAZE00000006	CDS	82149420	82150071	-

Transcript Sequence
>GWHTAAZE023052 ATGCTTCTTCTGTCGCCGGAATCTCACACAAGTCTTTACTTCCCGGTGACCGCAGCATCTACAATGTCCGGACGCCCTCTTCAATTTTTACCGTCTAGGAGCTATTCAGCCCCCAATAGCTTCAGTTTGCAACGCAAACCGATGAGGAGCTCATTTGCATCTTCTTCTTCTTCTGGTATTGGCAAGGCAATTGCATTGGGTTTAGGCCGAGCTGGTTGGAAGGTTCTGGTTAATTATGCTAGGTCATCAAAGGAAGCAGAAGAAATTGAGGCATGTGGTGGTCAGGCCCTTACTTTTGAGGGAGTTGTTTTGAAAGAATCAGACGTGGAATCTATGATCAAAACTGCAGTTGATATGTGGGGAACTACTGATATATTGATAAACAATGCAGGTATTACAAGGGATGGTTTGTTGATGAGAATGAAGAAACCTCAGTGGGAGGAAGTTATCAATTTAAATCTCACGGGCGTTTTCCTCTGTATACAGGCAGCAGCCAAAATTATGATGAAGAAGAAAAAGGGTAGAATCATCAATATAGCATCAGTTGTTGGTCTTGTTGGCAACGTTGGGCAAGCCAATTATAGTGCTGCAAAAGCAGGGGTGAATGCTGTAGCCCCAGGGTTTATTGCATCGGATATGACTGCTAAGCTTGGGGGAGAAATCAAGAAAAAGATCTTGGTGACCATCCCCTTAGGAAGATATGGCCAACCAGAAGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTCAATCCTGCTGCAAGTTACATTACTGGACAGGCCAGTAAAGTGCTTAACATTGATGGCGGGATGGTGCTGAATTGGAGTTTTAAAAGGGCTGAAGCTTCAAGTTGCCTCCTCTCTCTAGCTCATGGCACCCCTGCTGTTTGCCTAGCCACCTATTCTATGCTAAACTCGCAAACACAACTTAACTTCGCTTCTCTAAACACGACCTTCCAAAACCTCGTACTCGATTACAGCATCGCCTACTTCTTCATAGACCTTTTCCACTACTTAGTCTTCATCCCTACCGATGTCCTCTTCATTGCTCACCACTTGGCAACATTATACGTCTTCATAACGTGTCGATATGTGATTGGTCACGGCGCATTTGCGATTCTTGGCCTTCTTGTTCTTGCAGAGGTTACAAGCCCGTGTCAGAATACTTGGAGCCTCACGGGATACAGGAAGGCTGACGTGGTGGCGGCAGCTAGATTGTACGAGTTCTTGTCTCCTTTGTTTTATGGGTTTTATTCTGTGGTAAGAGGGATTTTGGGGACGATGTTTGTGTATAGAATGGGGTTGTTTTATGTAGGGGGTGAGGCTGAAGGATTGATACAGGGGTGGGCTTGGGTGTCTTGGATGGTTGTGATTGTTAGTGCAATATTGGTTAGCATTATGTGGGTATTGAATCTTTGGGTAGACTTATACAGAGAGAGAACAGAACGAGTGGTGAGAAAATTGAGTTAG

Network for GWHGAAZE023022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	57	204	7.40E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00059	fabG, OAR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.122
	SRR3591706	second leaf	7.026
	SRR3591707	mature leaf	24.373
	SRR3591708	Shoot apex	6.063
	SRR3591709	Stem	12.047
	SRR3591710	White floral bud	16.598
	SRR3591711	White flower	49.424
	SRR3591712	Green floral bud	4.776
	SRR3591713	Yellow flower	53.876
SRP173429	SRR8316895	Juvenile bud stage	5.038
	SRR8316896	Juvenile bud stage	5.136
	SRR8316897	Juvenile bud stage	3.573
	SRR8316894	Third green stage	3.124
	SRR8316900	Third green stage	4.982
	SRR8316901	Third green stage	4.995
	SRR8316898	Complete white stage	6.823
	SRR8316899	Complete white stage	9.336
	SRR8316903	Complete white stage	14.763
	SRR8316902	Silver flowering stage	19.681
	SRR8316904	Silver flowering stage	22.543
	SRR8316905	Silver flowering stage	9.504
	SRR8316906	Gold flowering stage	30.738
	SRR8316907	Gold flowering stage	40.820
	SRR8316908	Gold flowering stage	34.731
SRP132670	SRR6706286	Control	7.182
	SRR6706287	Light intensity 50%	8.281
	SRR6706288	Light intensity 20%	7.312
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.892
	CNS0095593	Slightly white alabastrum(diploid) 2	3.240
	CNS0095594	Slightly white alabastrum(diploid) 3	4.118
	CNS0095595	Whole white alabastrum(diploid) 2	3.832
	CNS0095596	Whole white alabastrum(diploid) 3	2.745
	CNS0095597	Whole white alabastrum(diploid) 4	4.670
	CNS0095598	Silvery flower (diploied) 1	12.545
	CNS0095599	Silvery flower (diploied) 2	10.218
	CNS0095600	Silvery flower (diploied) 3	21.605
	CNS0095601	Golden flower (diploid) 1	12.388
	CNS0095602	Golden flower (diploid) 2	27.878
	CNS0095603	Golden flower (diploid) 3	27.229
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.634
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.334
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.833
	CNS0095610	Silvery flower (tetraploid) 1	31.739
	CNS0095611	Silvery flower (tetraploid) 2	21.455
	CNS0095612	Silvery flower (tetraploid) 3	14.816
	CNS0095613	Golden flower (tetraploid) 1	39.691
	CNS0095614	Golden flower (tetraploid) 2	32.896
	CNS0095615	Golden flower (tetraploid) 3	60.920
CRA001975	CRR073297	Stem 1	4.423
	CRR073298	Stem 2	3.106
	CRR073299	Stem 3	1.659
	CRR073300	Leaf 1	2.964
	CRR073301	Leaf 2	3.384
	CRR073302	Leaf 3	1.054
	CRR073303	Juvenile bud 1	1.625
	CRR073304	Juvenile bud 2	1.837
	CRR073305	Juvenile bud 3	3.287
	CRR073306	Third green 1	24.168
	CRR073307	Third green 2	29.095
	CRR073308	Third green 3	26.470
	CRR073309	Second white 1	38.799
	CRR073310	Second white 2	28.530
	CRR073311	Second white 3	34.905
	CRR073312	Silver flowering 1	41.622
	CRR073313	Silver flowering 2	42.524
	CRR073314	Silver flowering 3	29.784
	CRR073315	Gold flowering 1	9.630
	CRR073316	Gold flowering 2	10.775
	CRR073317	Gold flowering 3	10.100
	CRR073318	Tawny withering 1	2.864
	CRR073319	Tawny withering 2	7.002
	CRR073320	Tawny withering 3	3.659