Gene detail

Detail information of GWHGAAZE023011

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086725.1	0	PREDICTED: probable thimet oligopeptidase isoform X2 [Sesamum indicum]
COG	YP_007248744.1	3E-89	Zn-dependent oligopeptidase
Swissprot	tr\|F4HTQ1\|MPRO1_ARATH	0	Probable thimet oligopeptidase
trEMBL	tr\|A0A067JSB1\|A0A067JSB1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26747.1}
TAIR10	AT1G67690.1	0	Zincin-like metalloproteases family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81997890	82009785	-
GWHAAZE00000006	mRNA	81997890	82009785	-
GWHAAZE00000006	exon	82009656	82009785	-
GWHAAZE00000006	exon	82009441	82009562	-
GWHAAZE00000006	exon	82007332	82007495	-
GWHAAZE00000006	exon	82005786	82005876	-
GWHAAZE00000006	exon	82004732	82004911	-
GWHAAZE00000006	exon	82004160	82004240	-
GWHAAZE00000006	exon	82003255	82003332	-
GWHAAZE00000006	exon	82002877	82002969	-
GWHAAZE00000006	exon	82002544	82002624	-
GWHAAZE00000006	exon	82001763	82001925	-
GWHAAZE00000006	exon	82001549	82001669	-
GWHAAZE00000006	exon	82001378	82001447	-
GWHAAZE00000006	exon	82000862	82000969	-
GWHAAZE00000006	exon	82000074	82000171	-
GWHAAZE00000006	exon	81999943	81999988	-
GWHAAZE00000006	exon	81999552	81999648	-
GWHAAZE00000006	exon	81999126	81999199	-
GWHAAZE00000006	exon	81998946	81999050	-
GWHAAZE00000006	exon	81998623	81998703	-
GWHAAZE00000006	exon	81997890	81997997	-
GWHAAZE00000006	CDS	82009656	82009785	-
GWHAAZE00000006	CDS	82009441	82009562	-
GWHAAZE00000006	CDS	82007332	82007495	-
GWHAAZE00000006	CDS	82005786	82005876	-
GWHAAZE00000006	CDS	82004732	82004911	-
GWHAAZE00000006	CDS	82004160	82004240	-
GWHAAZE00000006	CDS	82003255	82003332	-
GWHAAZE00000006	CDS	82002877	82002969	-
GWHAAZE00000006	CDS	82002544	82002624	-
GWHAAZE00000006	CDS	82001763	82001925	-
GWHAAZE00000006	CDS	82001549	82001669	-
GWHAAZE00000006	CDS	82001378	82001447	-
GWHAAZE00000006	CDS	82000862	82000969	-
GWHAAZE00000006	CDS	82000074	82000171	-
GWHAAZE00000006	CDS	81999943	81999988	-
GWHAAZE00000006	CDS	81999552	81999648	-
GWHAAZE00000006	CDS	81999126	81999199	-
GWHAAZE00000006	CDS	81998946	81999050	-
GWHAAZE00000006	CDS	81998623	81998703	-
GWHAAZE00000006	CDS	81997890	81997997	-

Transcript Sequence
>GWHTAAZE023041 ATGGCCACCAAACAGAAGAAAGAGAGAAACAATCTGTTAGCCCTCACCGGAGCTGCTGCTCTCCTCGCCATCGCCGTCAACTTCGCCATCACTGCTATCAACTCCCACAAGATAAATCGGAAGAAGAAAGTTCTTCGAGGCACTGATGTTCATATCGGACTCTCGGCGTCTGAAATTCTTAGATTAGCAGATCGTATTATTACCAAATCGAAGGAGGTACACGATGCTGTTTCTTCAGTTCCTCTTGACAAGGTCACCTATAATAATGTGATATTGCCGCTGGTAGACTTGGAAGCACAGCAATTCCCACTGGTACAGTCTTGCGTCTTTCCAAAACTGGTGTCCACTTCAGAAGATGTACGCAAAGCAAGTGCTGAAGCAGAACGGAGAATCGATGCTCATGTTTTGACTTGCAGTAAACGTGAAGATGTGTACCGTGTCGTCAAAGCTTTTGCAGCATGGGGAGAATGGATAAGTCCTGAGGCCAAACGCTATACACAGTTCCTGGTTAGAGAATTTGAACGGAATGGATTAAACCTTACCTTAACTAAGCGCAAGGAATTGCAACGTTTGAGGGCTCAAATAGATGAATTAAGTTTGCGATATATCCGAAATCTGAATGATGATACTTCATTTGTTCTCTTTAGTGAGAAGGAGTTGGTTGGCTTACCAGTAGAGTTCCTCAAGAGCTTAGACAAAGCTGAAAATGGTAAATTCAAGATCACTTTGAGAAATCATCATGTTTCACCAGTACTAGAGCTCTCTAAGGTAGGATTGACCAGAAGGCTTGTGGCTGTGGCTTACGGGAAGAGATGTGAAGTCAACCTTTCTGTCTTAGAAAAACTGGTTCAGTTGAGGCATAAATGTGCTCGATTGCTTGGCTTCTCAAATTATGCAGACTATGCTGTTGATCTTAGAATGGCGAAGTCATCCTCAAAGGTATTTGAGTTCTTAGAGAACATTTCTGCCAGTTTGAGTGACTTGGCTTCTAGAGAACTTACTATTTTGAAAGACTTGAAGAGGAAAGAAGAAGGAGAGTTTCCCTTTGGAATTGAGGACCTACAATACTATGTGAAGAGGGTAGAAGAACAACAGTTTAATCTGGACTTTGGAGTTGTTAAGCAGTACTTTCCTGTCAATTTGGTCCTGTCAGGGATCTTCAAAATATGCCAAGATCTTTTTGGCTTAAGATTTGAGGAAACTGCAGATGCCGAGGTTTGGCACTCTGACGTCCACCTTTACTCAGTTTTTGACTTGAGTTCTAGTGAACTTTTGGGTTACTTCTACCTCGATTTGTACACCAGGGAAGGAAAATATGGTCACACCTGTGTTGTGGCTCTCCAAAACGGTTCATCTTACAATAATGCACCACAGATTCCTGTGGCATTACTTATATCTCAATTGCAAGAGGAAGTGGGTGGTCGCCCCGGCTTATTACGATTCTCTGAAGTGGTTAATCTTTTCCATGAGTTTGGTCATGTGGTCCATCATATTTGCAATCGTGCATCATTTCCCAGATTTTCTGGGTTGCGGCTTGATCCTGATTTTGCAGAGATCCCTGCCCTGGTATTGGAAAACTGGTGTTACGAAAGCACCTCCCTGAAATTGCTATCCGGTTTTCATCAGGATATCACGAAGCCCATCGAGGATGAAATTTGCAGTTCACTTAAGAGATGGCGATTTTCCTTTTCAGCGCTTAAGCTGAAGCAAGAGATTCTTTATTGTCTCTTTGATCAGATGATACATTCAACGGAAAATGTTGACCTTGTTGGGTTAATCAAGCATCTTCATCCAAAGGTAATGTCAGGTTTACCAATGTTAGAAGGGACCAACCCAGCTTCATGTTTCCCACAAAGTGCTATTGGCTATGAAGCTGCTTGCTACAGCCGCATTTGGAGTGAGGTTTTTGCTGCCGATGTATTTTCCTCAAAGTTCCAAGATGATATTTTCAACCAGTATGCAGGCATGCAATTCAGGAACAAGGTACTGGGTCGAGGAGGAGCAAAGGATCCTATTGAGATCCTGTCTGATTTTCTAGGAAGGGAGCCCTCAATCCGAGCTTTTGTTGACAGGAGAGCTAATTCTAGTTAG

Network for GWHGAAZE023011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01432.21	Peptidase_M3	260	691	5.10E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01392	THOP1	Renin-angiotensin system	map04614

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008237	molecular_function	metallopeptidase activity
GO:0004222	molecular_function	metalloendopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.621
	SRR3591706	second leaf	13.881
	SRR3591707	mature leaf	20.340
	SRR3591708	Shoot apex	24.540
	SRR3591709	Stem	21.000
	SRR3591710	White floral bud	33.724
	SRR3591711	White flower	38.440
	SRR3591712	Green floral bud	23.326
	SRR3591713	Yellow flower	41.615
SRP173429	SRR8316895	Juvenile bud stage	13.941
	SRR8316896	Juvenile bud stage	21.085
	SRR8316897	Juvenile bud stage	9.421
	SRR8316894	Third green stage	9.614
	SRR8316900	Third green stage	25.534
	SRR8316901	Third green stage	25.371
	SRR8316898	Complete white stage	15.833
	SRR8316899	Complete white stage	33.524
	SRR8316903	Complete white stage	29.607
	SRR8316902	Silver flowering stage	15.932
	SRR8316904	Silver flowering stage	22.093
	SRR8316905	Silver flowering stage	9.736
	SRR8316906	Gold flowering stage	35.724
	SRR8316907	Gold flowering stage	36.002
	SRR8316908	Gold flowering stage	33.388
SRP132670	SRR6706286	Control	22.211
	SRR6706287	Light intensity 50%	22.341
	SRR6706288	Light intensity 20%	24.069
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.241
	CNS0095593	Slightly white alabastrum(diploid) 2	10.860
	CNS0095594	Slightly white alabastrum(diploid) 3	9.722
	CNS0095595	Whole white alabastrum(diploid) 2	10.868
	CNS0095596	Whole white alabastrum(diploid) 3	10.400
	CNS0095597	Whole white alabastrum(diploid) 4	12.379
	CNS0095598	Silvery flower (diploied) 1	18.006
	CNS0095599	Silvery flower (diploied) 2	13.906
	CNS0095600	Silvery flower (diploied) 3	32.426
	CNS0095601	Golden flower (diploid) 1	19.409
	CNS0095602	Golden flower (diploid) 2	24.348
	CNS0095603	Golden flower (diploid) 3	27.008
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.883
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.175
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.582
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.051
	CNS0095610	Silvery flower (tetraploid) 1	32.753
	CNS0095611	Silvery flower (tetraploid) 2	38.813
	CNS0095612	Silvery flower (tetraploid) 3	53.519
	CNS0095613	Golden flower (tetraploid) 1	23.445
	CNS0095614	Golden flower (tetraploid) 2	25.951
	CNS0095615	Golden flower (tetraploid) 3	36.228
CRA001975	CRR073297	Stem 1	20.186
	CRR073298	Stem 2	16.871
	CRR073299	Stem 3	10.461
	CRR073300	Leaf 1	21.893
	CRR073301	Leaf 2	18.187
	CRR073302	Leaf 3	9.615
	CRR073303	Juvenile bud 1	14.013
	CRR073304	Juvenile bud 2	10.681
	CRR073305	Juvenile bud 3	16.930
	CRR073306	Third green 1	11.169
	CRR073307	Third green 2	7.999
	CRR073308	Third green 3	12.076
	CRR073309	Second white 1	14.522
	CRR073310	Second white 2	17.425
	CRR073311	Second white 3	16.721
	CRR073312	Silver flowering 1	13.841
	CRR073313	Silver flowering 2	11.865
	CRR073314	Silver flowering 3	12.242
	CRR073315	Gold flowering 1	3.098
	CRR073316	Gold flowering 2	5.687
	CRR073317	Gold flowering 3	2.225
	CRR073318	Tawny withering 1	9.006
	CRR073319	Tawny withering 2	6.885
	CRR073320	Tawny withering 3	7.846