Gene detail

Detail information of GWHGAAZE023010

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071183.1	0	PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Sesamum indicum]
Swissprot	tr\|Q9LU89\|2A5N_ARATH	0	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
trEMBL	tr\|A0A067GQY1\|A0A067GQY1_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO82044.1}
TAIR10	AT1G13460.2	6E-161	Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81993328	81994521	-
GWHAAZE00000006	mRNA	81993328	81994521	-
GWHAAZE00000006	exon	81994392	81994521	-
GWHAAZE00000006	exon	81993328	81994355	-
GWHAAZE00000006	CDS	81994392	81994521	-
GWHAAZE00000006	CDS	81993328	81994355	-

Transcript Sequence
>GWHTAAZE023040 ATGATCAAAAGCCTACTTAGTAAGCTTCCCAGGAAACAATCAAAATCGGCTAGAAATTCGGAATTCGCTGGAAACCCTGCCCTCACTTTAAATTCTTCTACGAGTTCAAAAAGTAGTGATGGAGGAAGTACCCCTTACTCTCTCTCTAATATTGCTGAAAAATTTATTGGAGATACGAATTCGGTCAACGCTTCTTACGAAGCATTGCCAAATCTTAGGGATGTTCCAAGTACTGAGAAACAGAACATGTTTATCAGAAAGTTGAACATGTGTTGTGTTGTATTTGACTTCACCGACCCGACAAAGAACCTCAAAGAAAAGGAGATCAAGCGACAGACTTTGGTAGAGCTAGTTGATTACTTGACTTCTCCAAATATCAAGTTTTCAGAAACTGTCATACAAGAGGCTGTTAAAATGGTATCTTTTAATTTGTTTAGGGAACTTATTCCTCAAACACACGATAACAAAGTTCTACATGCATTTGATGTGGAAGAGGAAGAGCCTTGTATGGATCCTTCATGGCCTCATTTGCAAATTGTATACGAGTTTCTCCTCAGGCTTGTTGCATCCCCCGAGACTGATGCAAAATTAGCAAAACGGTATATAGATCACTCGTTTGTTCTCAAGTTGCTTGATTTATTTGATTCTGAAGATCCCCGAGAGAGGGAATACTTGAAAACAATACTGCACCGCATCTATGGGAAATTTATGGTACATCGGCCTTTCATAAGGAAATCTATCAACAACATATTTTATCGTTTTATTTTTGAGACTGAGAAGCACAACGGTACTACTGAACTTCTAGAGATCTTGGGCAGTATAATCAATGGATTTGCTTTGCCGTTGAAAGAAGAACACAAGCTGTTTCTTATTCGTGCATTGATTCCCTTGCACAAGCCAAAATGCTTAGCAATGTACCACCAGCAGCTATCTTATTGTATCATACAATTTGTGGAGAAAGACTGCAAGCTTGCGGATATCGTTATAAGGGGTTTGTTGAAGTATTGGCCAATCACCAATAGTTCCAAGGAAGTGATGTTTCTCAGTGAACTGGAGGAAGTTCTAGAAGTAACTCAACCACCAGAATTCCAGCGCTGTATGGTGCCTTTGTTTCAGCAAATTGCTCGTTGCTTGAATAGTTTGCACTTTCAGGTATGA

Network for GWHGAAZE023010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01603.21	B56	69	385	6.30E-147

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11584	PPP2R5	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.760
	SRR3591706	second leaf	3.977
	SRR3591707	mature leaf	5.294
	SRR3591708	Shoot apex	9.701
	SRR3591709	Stem	10.293
	SRR3591710	White floral bud	13.257
	SRR3591711	White flower	17.963
	SRR3591712	Green floral bud	14.105
	SRR3591713	Yellow flower	15.960
SRP173429	SRR8316895	Juvenile bud stage	6.210
	SRR8316896	Juvenile bud stage	7.935
	SRR8316897	Juvenile bud stage	4.182
	SRR8316894	Third green stage	3.291
	SRR8316900	Third green stage	9.875
	SRR8316901	Third green stage	9.687
	SRR8316898	Complete white stage	5.869
	SRR8316899	Complete white stage	17.554
	SRR8316903	Complete white stage	8.904
	SRR8316902	Silver flowering stage	7.536
	SRR8316904	Silver flowering stage	11.796
	SRR8316905	Silver flowering stage	4.053
	SRR8316906	Gold flowering stage	17.712
	SRR8316907	Gold flowering stage	10.053
	SRR8316908	Gold flowering stage	16.435
SRP132670	SRR6706286	Control	1.630
	SRR6706287	Light intensity 50%	2.086
	SRR6706288	Light intensity 20%	2.398
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.623
	CNS0095593	Slightly white alabastrum(diploid) 2	6.555
	CNS0095594	Slightly white alabastrum(diploid) 3	4.543
	CNS0095595	Whole white alabastrum(diploid) 2	4.685
	CNS0095596	Whole white alabastrum(diploid) 3	3.568
	CNS0095597	Whole white alabastrum(diploid) 4	3.606
	CNS0095598	Silvery flower (diploied) 1	8.162
	CNS0095599	Silvery flower (diploied) 2	5.476
	CNS0095600	Silvery flower (diploied) 3	16.264
	CNS0095601	Golden flower (diploid) 1	6.672
	CNS0095602	Golden flower (diploid) 2	14.256
	CNS0095603	Golden flower (diploid) 3	13.447
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.696
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.956
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.210
	CNS0095610	Silvery flower (tetraploid) 1	12.917
	CNS0095611	Silvery flower (tetraploid) 2	19.447
	CNS0095612	Silvery flower (tetraploid) 3	10.821
	CNS0095613	Golden flower (tetraploid) 1	7.020
	CNS0095614	Golden flower (tetraploid) 2	9.119
	CNS0095615	Golden flower (tetraploid) 3	9.537
CRA001975	CRR073297	Stem 1	4.365
	CRR073298	Stem 2	3.577
	CRR073299	Stem 3	2.492
	CRR073300	Leaf 1	5.207
	CRR073301	Leaf 2	3.921
	CRR073302	Leaf 3	2.418
	CRR073303	Juvenile bud 1	4.125
	CRR073304	Juvenile bud 2	3.290
	CRR073305	Juvenile bud 3	4.312
	CRR073306	Third green 1	1.325
	CRR073307	Third green 2	1.207
	CRR073308	Third green 3	1.329
	CRR073309	Second white 1	3.523
	CRR073310	Second white 2	3.051
	CRR073311	Second white 3	3.402
	CRR073312	Silver flowering 1	2.640
	CRR073313	Silver flowering 2	2.246
	CRR073314	Silver flowering 3	1.303
	CRR073315	Gold flowering 1	2.713
	CRR073316	Gold flowering 2	3.573
	CRR073317	Gold flowering 3	2.137
	CRR073318	Tawny withering 1	7.142
	CRR073319	Tawny withering 2	10.971
	CRR073320	Tawny withering 3	5.797