Gene detail

Detail information of GWHGAAZE022996

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007223077.1	2.0211E-172	hypothetical protein PRUPE_ppa003754mg [Prunus persica]
COG	YP_005440364.1	6E-37	hypothetical protein CLDAP_04270
Swissprot	tr\|Q9FYL3\|ALB31_ARATH	7E-147	ALBINO3-like protein 1, chloroplastic (Precursor)
trEMBL	tr\|M5XFN4\|M5XFN4_PRUPE	8E-173	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24276.1}
TAIR10	AT1G24490.1	2E-111	OxaA/YidC-like membrane insertion protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81784152	81788063	-
GWHAAZE00000006	mRNA	81784152	81788063	-
GWHAAZE00000006	exon	81784152	81784232	-
GWHAAZE00000006	exon	81784506	81784857	-
GWHAAZE00000006	exon	81784952	81785161	-
GWHAAZE00000006	exon	81785843	81785949	-
GWHAAZE00000006	exon	81786484	81786591	-
GWHAAZE00000006	exon	81786746	81786850	-
GWHAAZE00000006	exon	81786967	81787040	-
GWHAAZE00000006	exon	81787581	81787641	-
GWHAAZE00000006	exon	81787890	81788063	-
GWHAAZE00000006	CDS	81787890	81788063	-
GWHAAZE00000006	CDS	81787581	81787641	-
GWHAAZE00000006	CDS	81786967	81787040	-
GWHAAZE00000006	CDS	81786746	81786850	-
GWHAAZE00000006	CDS	81786484	81786591	-
GWHAAZE00000006	CDS	81785843	81785949	-
GWHAAZE00000006	CDS	81784952	81785161	-
GWHAAZE00000006	CDS	81784506	81784857	-
GWHAAZE00000006	CDS	81784152	81784232	-

Transcript Sequence
>GWHTAAZE023026 ATGTTTTATCTAAGCTTGGATACTTATAATTGCAATGTCAATGTTGAATTTATGGTCATAATGACTAATGACGCTATGTCATCTATAAATACTGCGCAGGTAGAATCTGCAATGGCAATGCGATCTTTGGCGCCTCAGATAAAGGCTATTCAGCAACGGTACGCTGGCGATCAGGAGAGAATTCAGCTTGAAACTGCTCGACTGTATAAACTTGCTGGGATAAATCCACTTGCAGGATGCTTGCCAACACTTGCCACCATACCTGTATGGATTGGGCTCTACAGAGCCCTTTCAAATGTTGCAGATGAGGGACTACTATCAGAAGGCTTCTTCTGGATACCCTCCCTTGCTGGTCCAACAACTGTTGCTGCTCGACAAAGTGGCAGTGGCATCTCTTGGCTTTTTCCTTTTGTAGATGGCCAACCCCCTCTTGGATGGTCAGATACATTGGCGTATCTTGTCTTGCCCGTGTTACTCGTTATCTCTCAGTACGTCTCTGTTCAAATCATGCAGTCATCACAGAGTAACAATGATCCAAACCAGAAGACTTCTCAAGCCGTAACGAAATTTCTGCCCTTAATGATCGGATATTTTGCTCTTTCAGTTCCTTCTGGGCTAAGCCTTTATTGGTTCACAAATAACATATTGAGCACAGCCCAACAAGTATTTCTTCAAAAATTTGGGGGTGCAAGCAATCCAATGAGTCAGTTCACCGATGATATCGTTAAAGAAGTGCCATCGAAGACAATTCAGAGTTCCATTTCTGAAACAATCACAGTCAAAGATACACCCAAAGTAAAAGAAAAGCTCACTCCGGAAGGGCCCCGCCCTGGTGAAAGATTTAAACAGTTAAAGGAGCAAGAGGCAAGAAGAAAACAGCAAAGAGAGGAAGAGAAAAGAAAGGCAGCAGCAGCTAAAGGAATTCAAATTACAAAGGTCGAAGATAAGAAAGAAGCCAATTTAGTTGAGAGGGAAGATGCAAATGGAGCTGCTATTATTGATGCTAACAACTCTGTGACTACCACTAGCAATTCTAATAGTAGTGAATCTCATGTTGTAAATGGGGATTCTTCTCTGGACTCAAAGGAAGACCAAAAGACAACTTCTATCCATAGGATGGAAAAAGGCGAAGTTTCAGTTAGTTACGACTGTGGGAGGGATAATCAACATCTTCATGAAAATCCAGAAAAGGATGAAGCAGTTGCTAGAGTGGGTGCTGCTGCAGAAAACAAACTTTCTGGAGAAGAATTACGCCAGGACAGAAGTGAGTGA

Network for GWHGAAZE022996

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02096.21	60KD_IMP	17	226	8.10E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03217	yidC, spoIIIJ, OXA1, ccfA	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0032977	molecular_function	membrane insertase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.275
	SRR3591706	second leaf	45.327
	SRR3591707	mature leaf	57.433
	SRR3591708	Shoot apex	42.991
	SRR3591709	Stem	21.630
	SRR3591710	White floral bud	41.805
	SRR3591711	White flower	55.139
	SRR3591712	Green floral bud	52.629
	SRR3591713	Yellow flower	59.810
SRP173429	SRR8316895	Juvenile bud stage	17.187
	SRR8316896	Juvenile bud stage	22.007
	SRR8316897	Juvenile bud stage	12.621
	SRR8316894	Third green stage	12.647
	SRR8316900	Third green stage	41.216
	SRR8316901	Third green stage	35.377
	SRR8316898	Complete white stage	9.971
	SRR8316899	Complete white stage	39.945
	SRR8316903	Complete white stage	17.821
	SRR8316902	Silver flowering stage	14.812
	SRR8316904	Silver flowering stage	20.201
	SRR8316905	Silver flowering stage	11.316
	SRR8316906	Gold flowering stage	51.652
	SRR8316907	Gold flowering stage	44.286
	SRR8316908	Gold flowering stage	56.908
SRP132670	SRR6706286	Control	25.157
	SRR6706287	Light intensity 50%	25.352
	SRR6706288	Light intensity 20%	26.011
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.281
	CNS0095593	Slightly white alabastrum(diploid) 2	14.527
	CNS0095594	Slightly white alabastrum(diploid) 3	11.543
	CNS0095595	Whole white alabastrum(diploid) 2	14.287
	CNS0095596	Whole white alabastrum(diploid) 3	13.258
	CNS0095597	Whole white alabastrum(diploid) 4	11.409
	CNS0095598	Silvery flower (diploied) 1	18.712
	CNS0095599	Silvery flower (diploied) 2	13.969
	CNS0095600	Silvery flower (diploied) 3	28.824
	CNS0095601	Golden flower (diploid) 1	15.983
	CNS0095602	Golden flower (diploid) 2	27.136
	CNS0095603	Golden flower (diploid) 3	26.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.634
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.378
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.126
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.578
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.593
	CNS0095610	Silvery flower (tetraploid) 1	33.985
	CNS0095611	Silvery flower (tetraploid) 2	41.087
	CNS0095612	Silvery flower (tetraploid) 3	42.325
	CNS0095613	Golden flower (tetraploid) 1	22.523
	CNS0095614	Golden flower (tetraploid) 2	31.146
	CNS0095615	Golden flower (tetraploid) 3	34.923
CRA001975	CRR073297	Stem 1	22.921
	CRR073298	Stem 2	22.708
	CRR073299	Stem 3	16.931
	CRR073300	Leaf 1	24.450
	CRR073301	Leaf 2	22.205
	CRR073302	Leaf 3	21.281
	CRR073303	Juvenile bud 1	20.906
	CRR073304	Juvenile bud 2	15.177
	CRR073305	Juvenile bud 3	26.387
	CRR073306	Third green 1	12.245
	CRR073307	Third green 2	7.366
	CRR073308	Third green 3	10.077
	CRR073309	Second white 1	28.065
	CRR073310	Second white 2	30.516
	CRR073311	Second white 3	30.954
	CRR073312	Silver flowering 1	31.047
	CRR073313	Silver flowering 2	35.787
	CRR073314	Silver flowering 3	29.926
	CRR073315	Gold flowering 1	25.983
	CRR073316	Gold flowering 2	43.585
	CRR073317	Gold flowering 3	26.861
	CRR073318	Tawny withering 1	9.523
	CRR073319	Tawny withering 2	10.907
	CRR073320	Tawny withering 3	10.210