Gene detail

Detail information of GWHGAAZE022992

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282072.3	1.3038E-179	PREDICTED: cleavage and polyadenylation specificity factor subunit 6 isoform X1 [Vitis vinifera]
COG	YP_005845019.1	0.000000005	RRM domain-containing protein
Swissprot	tr\|Q9SVM8\|RBG2_ARATH	0.000000004	Glycine-rich RNA-binding protein 2, mitochondrial (Precursor)
trEMBL	tr\|F6GVJ6\|F6GVJ6_VITVI	4E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44015.1}
TAIR10	AT1G13190.1	6E-45	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81692611	81693993	+
GWHAAZE00000006	mRNA	81692611	81693993	+
GWHAAZE00000006	exon	81692611	81693023	+
GWHAAZE00000006	exon	81693054	81693260	+
GWHAAZE00000006	exon	81693300	81693484	+
GWHAAZE00000006	exon	81693545	81693657	+
GWHAAZE00000006	exon	81693703	81693993	+
GWHAAZE00000006	CDS	81692611	81693023	+
GWHAAZE00000006	CDS	81693054	81693260	+
GWHAAZE00000006	CDS	81693300	81693484	+
GWHAAZE00000006	CDS	81693545	81693657	+
GWHAAZE00000006	CDS	81693703	81693993	+

Transcript Sequence
>GWHTAAZE023022 ATGGTTCCTAATGCAAATGTGAACCACCCAATGGTCAATGAAAGTCATATTAGGCCACCTGTAGACACCGGTGCCACCATGCTATTTGTTGGGGAGCTACATTGGTGGACTACTGATGCAGAGCTTGAGAGCGTGTTATCTCAATATGGTAGAGTCAAGGAGATTAAGTTTTTTGATGAGAGAGCTAGCGGTAAATCCAAGGGATATTGTCAGGTTGAATTCTATGAATCCTCTGCTGCGAGTGCATGTAAAGAAGGAATGGATGGTTATGTTTTCAATGGGCGACCTTGTGTTGTTGCATTTGCTTCTCCGCAAACTATACGGCAGATGGGTGCATCTTATATGAACAAATCTCAGGTTCAGCCACAGTCATCTCAGCCACAGGCGAGGAGGCCCATAAATGATGGAGCCGGAGATGGAGGGAGGAATTTTGGAGATGGAGGAAGGAATTTCGGGGATGGAGGGAGGAATTTCGGAAGAGGTGGGTGGGGACGAGGAGGGCAGGGAATTCTCAACAGGGGTCCTGGAAATGTACCCATGAGAGGAAGAGGAGGTGCTTTTGGGGCCAAGAACATGGTTGGAAATGCTCATGGCATTGGAGCTGGTGGTGGAGCTTATGGTGGGTTTATGCATCCTCAGGGTGTGATGGGTACTGGATTTGACCCAACTTATATGGGTCGAGGAGCTGGATATGGTGGCTTTCCAGGTCCCGCTTTTCCTGGGATGATGCCTCCATTTCCAGCTGTTAATACAATGGGACTTGCTGGGGTGGCTCCGCACGTCAACCCTGCCTTCTTTGGCCGTGGCATGTGGACCGACACTAGCATGGGTGGATGGGGTGGGGAAGAACACGGCCAGAGGACAAGAGAGTCAAGTTATGGTGGTGAAGATGGTGGTTCTGAATACGGGTATGGAGAGAAGGAACGGGGTTCTGAGCGTGAATGGTCCGGAACTTCTGAGAAGAGGCATCGTGATGACAGGGACCAAGAAAGGGACCGTTATGATAGGGAGCACAGGTACAAAGAGGAAAAAGACAGTTACCGAGATCATCGGCAAAAGGAGCGTGACTTGGGTTATGAGGATGAATGGGATCGGGGGCACTCGTCCTCAAGGCCTCGGAGCAGATCCCGAGCTATGCCAGAAGATGATCACAGGTCTCGGTCGAGGGATGCAGATTATGGAAAGCGGAGACGCCTCCCATCTGAGTGA

Network for GWHGAAZE022992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	28	97	9.00E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14398	CPSF6_7	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.258
	SRR3591706	second leaf	30.750
	SRR3591707	mature leaf	31.471
	SRR3591708	Shoot apex	44.669
	SRR3591709	Stem	31.937
	SRR3591710	White floral bud	42.343
	SRR3591711	White flower	51.043
	SRR3591712	Green floral bud	42.932
	SRR3591713	Yellow flower	50.633
SRP173429	SRR8316895	Juvenile bud stage	24.618
	SRR8316896	Juvenile bud stage	33.748
	SRR8316897	Juvenile bud stage	13.381
	SRR8316894	Third green stage	15.833
	SRR8316900	Third green stage	36.340
	SRR8316901	Third green stage	37.448
	SRR8316898	Complete white stage	10.489
	SRR8316899	Complete white stage	40.213
	SRR8316903	Complete white stage	28.641
	SRR8316902	Silver flowering stage	14.443
	SRR8316904	Silver flowering stage	20.184
	SRR8316905	Silver flowering stage	13.225
	SRR8316906	Gold flowering stage	53.334
	SRR8316907	Gold flowering stage	67.151
	SRR8316908	Gold flowering stage	56.455
SRP132670	SRR6706286	Control	68.729
	SRR6706287	Light intensity 50%	72.090
	SRR6706288	Light intensity 20%	72.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.437
	CNS0095593	Slightly white alabastrum(diploid) 2	26.919
	CNS0095594	Slightly white alabastrum(diploid) 3	27.065
	CNS0095595	Whole white alabastrum(diploid) 2	21.223
	CNS0095596	Whole white alabastrum(diploid) 3	19.232
	CNS0095597	Whole white alabastrum(diploid) 4	20.254
	CNS0095598	Silvery flower (diploied) 1	34.496
	CNS0095599	Silvery flower (diploied) 2	30.587
	CNS0095600	Silvery flower (diploied) 3	46.489
	CNS0095601	Golden flower (diploid) 1	31.888
	CNS0095602	Golden flower (diploid) 2	44.492
	CNS0095603	Golden flower (diploid) 3	48.088
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.635
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.808
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.567
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.080
	CNS0095610	Silvery flower (tetraploid) 1	74.643
	CNS0095611	Silvery flower (tetraploid) 2	48.801
	CNS0095612	Silvery flower (tetraploid) 3	48.061
	CNS0095613	Golden flower (tetraploid) 1	39.326
	CNS0095614	Golden flower (tetraploid) 2	60.380
	CNS0095615	Golden flower (tetraploid) 3	46.984
CRA001975	CRR073297	Stem 1	46.107
	CRR073298	Stem 2	46.813
	CRR073299	Stem 3	49.357
	CRR073300	Leaf 1	50.847
	CRR073301	Leaf 2	43.790
	CRR073302	Leaf 3	33.038
	CRR073303	Juvenile bud 1	42.150
	CRR073304	Juvenile bud 2	34.860
	CRR073305	Juvenile bud 3	58.975
	CRR073306	Third green 1	28.217
	CRR073307	Third green 2	19.653
	CRR073308	Third green 3	22.892
	CRR073309	Second white 1	39.253
	CRR073310	Second white 2	35.883
	CRR073311	Second white 3	35.348
	CRR073312	Silver flowering 1	32.168
	CRR073313	Silver flowering 2	33.800
	CRR073314	Silver flowering 3	23.262
	CRR073315	Gold flowering 1	17.588
	CRR073316	Gold flowering 2	29.448
	CRR073317	Gold flowering 3	26.446
	CRR073318	Tawny withering 1	34.085
	CRR073319	Tawny withering 2	23.748
	CRR073320	Tawny withering 3	27.905