Gene detail

Detail information of GWHGAAZE022981

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086690.1	3.4777E-180	PREDICTED: proteasome subunit beta type-7-A [Sesamum indicum]
COG	YP_003535609.1	7E-29	proteasome subunit beta
Swissprot	tr\|Q7DLS1\|PSB7B_ARATH	3E-175	Proteasome subunit beta type-7-B (Precursor)
trEMBL	tr\|A0A022QVQ7\|A0A022QVQ7_ERYGU	8E-179	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT5G40580.2	1E-138	20S proteasome beta subunit PBB2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81555358	81559564	+
GWHAAZE00000006	mRNA	81555358	81559564	+
GWHAAZE00000006	exon	81555358	81555501	+
GWHAAZE00000006	exon	81556945	81557086	+
GWHAAZE00000006	exon	81557467	81557563	+
GWHAAZE00000006	exon	81557643	81557712	+
GWHAAZE00000006	exon	81557808	81557912	+
GWHAAZE00000006	exon	81558805	81558903	+
GWHAAZE00000006	exon	81559032	81559119	+
GWHAAZE00000006	exon	81559488	81559564	+
GWHAAZE00000006	CDS	81555358	81555501	+
GWHAAZE00000006	CDS	81556945	81557086	+
GWHAAZE00000006	CDS	81557467	81557563	+
GWHAAZE00000006	CDS	81557643	81557712	+
GWHAAZE00000006	CDS	81557808	81557912	+
GWHAAZE00000006	CDS	81558805	81558903	+
GWHAAZE00000006	CDS	81559032	81559119	+
GWHAAZE00000006	CDS	81559488	81559564	+

Transcript Sequence
>GWHTAAZE023011 ATGTCTAAGGTAGCAGTAGATCTTCCTCCCAAGGGTGGCTTCAGTTTTGATTTGTGTAGGAGGAATGAGATGCTCAATAATAAGGGTTTCAAGTCTCAATCTTTTCTCAAGACCGGAACTACCATTGTTGGTTTAATTTTCCAGGATGGTGTAATTCTTGGGGCAGATACACGAGCAACTGAAGGACCTATTGTTGCTGATAAGAACTGTGAGAAAATTCATTACATGGCACCAAACATTTATTGCTGTGGAGCAGGGACAGCTGCTGATACAGAGGCAGTGACAGACACGATCAGCTCTAACCTGAATCTGCATCGTTATCATACTGGTCGAGAATCAAGGGTCGTCACTGCCCTTACACTTCTGAAGTCTCATCTTTTCCGGTATCAAGGTCATGTGTCAGCGGCTTTGGTGCTTGGTGGTGTTGATGTGACAGGGCCTCATTTGCACACAATTTACCCCCATGGATCAACTGACACGCTGCCATTTGCTACAATGGGCTCTGGTTCCCTCGCTGCAATGGCTGTTTTTGAATCGAAATACCGTGAAGGGATGAGTCGGGACGAAGGAGTAAATCTGGTGTGCGATGCTATCCGCTCAGGTATATTTAATGATCTGGGAAGTGGAAGCAATGTAGACATCTGTGTTATAACCAAGGGACACAAGGAGTACCTGAGAAATCACCTGCTACCAAATCCCCGTACATATGTCAGTTCAAAAGGATATTCATTTTCTAAGAAAACTGAGGTTCTGATGACAAAGATCACACCGTTAAAAGAGTTGGTGGAGGTAATTGAAGGAGGAGACGCAATGGAAGAATGA

Network for GWHGAAZE022981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	37	217	1.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02739	PSMB7	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004298	molecular_function	threonine-type endopeptidase activity
GO:0004175	molecular_function	endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	206.467
	SRR3591706	second leaf	114.614
	SRR3591707	mature leaf	80.834
	SRR3591708	Shoot apex	207.262
	SRR3591709	Stem	150.755
	SRR3591710	White floral bud	162.111
	SRR3591711	White flower	271.642
	SRR3591712	Green floral bud	172.304
	SRR3591713	Yellow flower	311.157
SRP173429	SRR8316895	Juvenile bud stage	120.013
	SRR8316896	Juvenile bud stage	171.466
	SRR8316897	Juvenile bud stage	67.275
	SRR8316894	Third green stage	67.227
	SRR8316900	Third green stage	202.101
	SRR8316901	Third green stage	197.415
	SRR8316898	Complete white stage	91.270
	SRR8316899	Complete white stage	238.834
	SRR8316903	Complete white stage	120.472
	SRR8316902	Silver flowering stage	109.036
	SRR8316904	Silver flowering stage	131.942
	SRR8316905	Silver flowering stage	68.681
	SRR8316906	Gold flowering stage	300.368
	SRR8316907	Gold flowering stage	262.281
	SRR8316908	Gold flowering stage	288.287
SRP132670	SRR6706286	Control	170.911
	SRR6706287	Light intensity 50%	183.096
	SRR6706288	Light intensity 20%	208.374
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	134.339
	CNS0095593	Slightly white alabastrum(diploid) 2	152.181
	CNS0095594	Slightly white alabastrum(diploid) 3	127.603
	CNS0095595	Whole white alabastrum(diploid) 2	116.239
	CNS0095596	Whole white alabastrum(diploid) 3	124.377
	CNS0095597	Whole white alabastrum(diploid) 4	99.059
	CNS0095598	Silvery flower (diploied) 1	134.061
	CNS0095599	Silvery flower (diploied) 2	122.438
	CNS0095600	Silvery flower (diploied) 3	206.133
	CNS0095601	Golden flower (diploid) 1	117.815
	CNS0095602	Golden flower (diploid) 2	207.507
	CNS0095603	Golden flower (diploid) 3	203.741
	CNS0095604	Slightly white alabastrum(tetraploid) 1	137.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	129.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	229.770
	CNS0095607	Whole white alabastrum(tetraploid) 1	88.163
	CNS0095608	Whole white alabastrum(tetraploid) 2	82.388
	CNS0095609	Whole white alabastrum(tetraploid) 3	177.454
	CNS0095610	Silvery flower (tetraploid) 1	199.196
	CNS0095611	Silvery flower (tetraploid) 2	173.792
	CNS0095612	Silvery flower (tetraploid) 3	168.573
	CNS0095613	Golden flower (tetraploid) 1	182.858
	CNS0095614	Golden flower (tetraploid) 2	200.884
	CNS0095615	Golden flower (tetraploid) 3	231.366
CRA001975	CRR073297	Stem 1	149.173
	CRR073298	Stem 2	147.811
	CRR073299	Stem 3	162.510
	CRR073300	Leaf 1	146.023
	CRR073301	Leaf 2	145.627
	CRR073302	Leaf 3	163.588
	CRR073303	Juvenile bud 1	166.391
	CRR073304	Juvenile bud 2	150.104
	CRR073305	Juvenile bud 3	154.111
	CRR073306	Third green 1	117.349
	CRR073307	Third green 2	111.684
	CRR073308	Third green 3	98.097
	CRR073309	Second white 1	199.269
	CRR073310	Second white 2	158.977
	CRR073311	Second white 3	118.368
	CRR073312	Silver flowering 1	144.534
	CRR073313	Silver flowering 2	177.983
	CRR073314	Silver flowering 3	125.744
	CRR073315	Gold flowering 1	63.158
	CRR073316	Gold flowering 2	87.583
	CRR073317	Gold flowering 3	68.948
	CRR073318	Tawny withering 1	118.443
	CRR073319	Tawny withering 2	99.814
	CRR073320	Tawny withering 3	119.233