Detail information of GWHGAAZE022954


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006483934.10PREDICTED: copper amine oxidase 1-like [Citrus sinensis]
COGYP_007125935.10Copper amine oxidase domain-containing protein
Swissprottr|Q8H1H9|AMO_ARATH2E-67Primary amine oxidase (Precursor)
trEMBLtr|A0A061EEA6|A0A061EEA6_THECC0Copper amine oxidase family protein isoform 1 {ECO:0000313|EMBL:EOY00609.1}
TAIR10AT2G42490.10Copper amine oxidase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8114579081151832-
GWHAAZE00000006mRNA8114579081151832-
GWHAAZE00000006exon8114579081145918-
GWHAAZE00000006exon8114613781146218-
GWHAAZE00000006exon8114686081147128-
GWHAAZE00000006exon8114723981147409-
GWHAAZE00000006exon8114761781147786-
GWHAAZE00000006exon8114797781148217-
GWHAAZE00000006exon8114834381148558-
GWHAAZE00000006exon8114870381149033-
GWHAAZE00000006exon8114913881149250-
GWHAAZE00000006exon8115072881151033-
GWHAAZE00000006exon8115112181151230-
GWHAAZE00000006exon8115174581151832-
GWHAAZE00000006CDS8115174581151832-
GWHAAZE00000006CDS8115112181151230-
GWHAAZE00000006CDS8115072881151033-
GWHAAZE00000006CDS8114913881149250-
GWHAAZE00000006CDS8114870381149033-
GWHAAZE00000006CDS8114834381148558-
GWHAAZE00000006CDS8114797781148217-
GWHAAZE00000006CDS8114761781147786-
GWHAAZE00000006CDS8114723981147409-
GWHAAZE00000006CDS8114686081147128-
GWHAAZE00000006CDS8114613781146218-
GWHAAZE00000006CDS8114579081145918-
Transcript Sequence

Network for GWHGAAZE022954

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02727.17Cu_amine_oxidN2411300.00019
PF02728.17Cu_amine_oxidN31662692.60E-31
PF01179.21Cu_amine_oxid2967134.50E-147
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00276AOC3, AOC2, tynA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycine, serine and threonine metabolismmap00260
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
beta-Alanine metabolismmap00410
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960

Gene Ontology

GO term OntologyName
GO:0009308biological_processamine metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0005507molecular_functioncopper ion binding
GO:0008131molecular_functionprimary amine oxidase activity
GO:0048038molecular_functionquinone binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.081
SRR3591706second leaf20.877
SRR3591707mature leaf9.375
SRR3591708Shoot apex32.242
SRR3591709Stem23.622
SRR3591710White floral bud27.833
SRR3591711White flower15.525
SRR3591712Green floral bud25.056
SRR3591713Yellow flower7.249
SRP173429 SRR8316895Juvenile bud stage 34.667
SRR8316896Juvenile bud stage 41.950
SRR8316897Juvenile bud stage 22.858
SRR8316894Third green stage 20.437
SRR8316900Third green stage 68.282
SRR8316901Third green stage 55.175
SRR8316898Complete white stage 46.383
SRR8316899Complete white stage 76.800
SRR8316903Complete white stage 85.813
SRR8316902Silver flowering stage11.600
SRR8316904Silver flowering stage17.714
SRR8316905Silver flowering stage8.043
SRR8316906Gold flowering stage 11.705
SRR8316907Gold flowering stage 17.661
SRR8316908Gold flowering stage 20.265
SRP132670SRR6706286Control60.116
SRR6706287Light intensity 50%71.875
SRR6706288Light intensity 20%70.583
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.919
CNS0095593Slightly white alabastrum(diploid) 242.482
CNS0095594Slightly white alabastrum(diploid) 325.812
CNS0095595Whole white alabastrum(diploid) 231.459
CNS0095596Whole white alabastrum(diploid) 331.771
CNS0095597Whole white alabastrum(diploid) 426.077
CNS0095598Silvery flower (diploied) 120.083
CNS0095599Silvery flower (diploied) 218.274
CNS0095600Silvery flower (diploied) 321.571
CNS0095601Golden flower (diploid) 115.765
CNS0095602Golden flower (diploid) 214.971
CNS0095603Golden flower (diploid) 313.824
CNS0095604Slightly white alabastrum(tetraploid) 145.529
CNS0095605Slightly white alabastrum(tetraploid) 239.819
CNS0095606Slightly white alabastrum(tetraploid) 397.124
CNS0095607Whole white alabastrum(tetraploid) 119.458
CNS0095608Whole white alabastrum(tetraploid) 218.179
CNS0095609Whole white alabastrum(tetraploid) 354.624
CNS0095610Silvery flower (tetraploid) 132.543
CNS0095611Silvery flower (tetraploid) 220.004
CNS0095612Silvery flower (tetraploid) 326.123
CNS0095613Golden flower (tetraploid) 112.576
CNS0095614Golden flower (tetraploid) 216.907
CNS0095615Golden flower (tetraploid) 34.256
CRA001975CRR073297Stem 172.202
CRR073298Stem 265.836
CRR073299Stem 355.802
CRR073300Leaf 186.778
CRR073301Leaf 274.612
CRR073302Leaf 368.873
CRR073303Juvenile bud 191.707
CRR073304Juvenile bud 279.627
CRR073305Juvenile bud 3121.258
CRR073306Third green 156.388
CRR073307Third green 268.130
CRR073308Third green 367.075
CRR073309Second white 110.805
CRR073310Second white 28.652
CRR073311Second white 36.131
CRR073312Silver flowering 14.049
CRR073313Silver flowering 23.942
CRR073314Silver flowering 33.214
CRR073315Gold flowering 118.418
CRR073316Gold flowering 228.951
CRR073317Gold flowering 311.514
CRR073318Tawny withering 134.118
CRR073319Tawny withering 223.856
CRR073320Tawny withering 334.805