Gene detail

Detail information of GWHGAAZE022949

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272814.3	0	PREDICTED: lysM domain receptor-like kinase 3 [Vitis vinifera]
COG	YP_002763346.1	9E-25	putative serine/threonine protein kinase
Swissprot	tr\|F4IB81\|LYK3_ARATH	4E-90	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|A0A068UYB1\|A0A068UYB1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13204.1}
TAIR10	AT1G51940.1	5E-79	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81091488	81094191	-
GWHAAZE00000006	mRNA	81091488	81094191	-
GWHAAZE00000006	exon	81091488	81091635	-
GWHAAZE00000006	exon	81091767	81091864	-
GWHAAZE00000006	exon	81091988	81092139	-
GWHAAZE00000006	exon	81092245	81092350	-
GWHAAZE00000006	exon	81092443	81092532	-
GWHAAZE00000006	exon	81092635	81092774	-
GWHAAZE00000006	exon	81092849	81093049	-
GWHAAZE00000006	exon	81093639	81094191	-
GWHAAZE00000006	CDS	81093639	81094191	-
GWHAAZE00000006	CDS	81092849	81093049	-
GWHAAZE00000006	CDS	81092635	81092774	-
GWHAAZE00000006	CDS	81092443	81092532	-
GWHAAZE00000006	CDS	81092245	81092350	-
GWHAAZE00000006	CDS	81091988	81092139	-
GWHAAZE00000006	CDS	81091767	81091864	-
GWHAAZE00000006	CDS	81091488	81091635	-

Transcript Sequence
>GWHTAAZE022979 ATGTACCCGCTAGCTTGCTCTGATCAAATAAAAACGTGTAACGCCATACTCTACCAAAACGACGGCCTCAACAAAGAAAAGATTGCCTTTTTCTACTCTGTCGACCAATCACAAATAATTCCCATTAGACGAAACAAGAAAACGGACTACCTTGTAAACGTACCTTGTTCTTGCAAAGATGTTAATGGTACAGTCGGGTACTTCTATGATACGCACTACAAAGTGCAACCAAATGACACATTTGTTGATGTTGCGGGTGAATATTATAGTGGGCAAGCTTGGCAAGTTGGAGATGAAGAAATAACGTACATACCAGATGAGGAGGTAGACATTCATCTTTTGTGTGGGTGTATAAAGAGTGATTCTGAGACGGTGGTTACTTACACGGTTCAGCTGCATGATACACTATCGGATATTGCTACTCTTTTATCTGCTCAGGTAAGTAAGATAGAGAGCTTGAACAAACTTCATACGAAAAATCCAGGGTATATAGATGTGGGTTGGGTGTTCTATGTACCAATGGAGAAGAATGGAATTCCGGGCCCAAAGAAAGGGATGATGAATAACAAGTGGACAATTATAATCGGTATATTATCGGCCGTGACGTTACTTTCAATGTGCACATTGGCCATAATCCTTCTCAGAAGAAATAGAGCCCAAAAAGCCGGCGAGGAAAATCCAAAAGCTGTTTCCAAAACCCTGAGTGCCCACAAATCTTTTTCCGTGCAGAACAAGTATAGAGAAAGGATGGAAGATCTCACAGGTTTTGAATCAGAAAGACCAGTAATATATAGTTTTGAGGAGATTGCCGAGGCTACATTTAACTTTGATGAAACTAGAAAAATTGGAGAGGGTGGATATGGGAGTGTATATTTTGGAGTATTACGAGAGCAGGAGGTTGCAGTAAAGAAGATGAGAGCTAACAATTGCAAGGAGTTTTTAGCAGAGCTCAAGGTTTTATGCAAGATGCATCATATAAATGTTGTAGAGCTGATCGGGTATGCCAGTGGAGACGACCACCTCTATTTAATTTACGAGTATATCTCAAATGGATCTCTTAATGAACATCTTCACGACCCCTTACTGAAAGGTCACCAGCCTCTCTCATGGACTGCGAGAACACAGGTTGCACTGGATACTGCAAAGGGCATTGAATATATTCATGACCACACAAAATCCCGGTATGTGCACCGAGATATAAAGACAAGCAACATCTTACTTGATGAGGGGGTCAGAGCAAAGGTTGCGGATTTTGGATTGGCAAAGCTTGTTGGACGGACCAACGAAGATGATTTTATAGCAACTCGTCTGGTTGGAACACCAGGATATCTTCCTCCTGAGTCTGTCAAAGAGCTGCAAGTTACCACAAAAACTGATGTTTTTGCATTTGGAGTAGTTCTGGCTGAGCTCATAACGGGTCAGCGTGCACTCATCCGTGATAATCAGGAGCCCAACAAGTTGAGATCACTCATCACAATAGTACGTTGA

Network for GWHGAAZE022949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01476.21	LysM	128	173	1.70E-06
PF00069.26	Pkinase	277	484	9.50E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.075
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.031
	SRR8316896	Juvenile bud stage	0.293
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.043
	SRR8316900	Third green stage	0.053
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	1.817
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.011
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.166
	CNS0095593	Slightly white alabastrum(diploid) 2	0.151
	CNS0095594	Slightly white alabastrum(diploid) 3	0.201
	CNS0095595	Whole white alabastrum(diploid) 2	0.146
	CNS0095596	Whole white alabastrum(diploid) 3	0.253
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.145
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.177
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.002
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.065
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.038
	CRR073300	Leaf 1	0.035
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.013
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.103
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000