Gene detail

Detail information of GWHGAAZE022935

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007044708.1	0	Nsp-interacting kinase 3 isoform 1 [Theobroma cacao]
COG	YP_004775215.1	6E-20	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q93ZS4\|NIK3_ARATH	4E-158	Protein NSP-INTERACTING KINASE 3 (Precursor)
trEMBL	tr\|A0A061E698\|A0A061E698_THECC	0	Nsp-interacting kinase 3 isoform 1 {ECO:0000313\|EMBL:EOY00540.1}
TAIR10	AT1G60800.1	2E-131	NSP-interacting kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80870009	80873054	+
GWHAAZE00000006	mRNA	80870009	80873054	+
GWHAAZE00000006	exon	80870009	80870111	+
GWHAAZE00000006	exon	80870186	80870432	+
GWHAAZE00000006	exon	80870548	80870619	+
GWHAAZE00000006	exon	80870730	80870873	+
GWHAAZE00000006	exon	80870974	80871045	+
GWHAAZE00000006	exon	80871151	80871216	+
GWHAAZE00000006	exon	80871300	80871397	+
GWHAAZE00000006	exon	80871482	80871628	+
GWHAAZE00000006	exon	80871819	80872114	+
GWHAAZE00000006	exon	80872737	80873054	+
GWHAAZE00000006	CDS	80870009	80870111	+
GWHAAZE00000006	CDS	80870186	80870432	+
GWHAAZE00000006	CDS	80870548	80870619	+
GWHAAZE00000006	CDS	80870730	80870873	+
GWHAAZE00000006	CDS	80870974	80871045	+
GWHAAZE00000006	CDS	80871151	80871216	+
GWHAAZE00000006	CDS	80871300	80871397	+
GWHAAZE00000006	CDS	80871482	80871628	+
GWHAAZE00000006	CDS	80871819	80872114	+
GWHAAZE00000006	CDS	80872737	80873054	+

Transcript Sequence
>GWHTAAZE022965 ATGGAGAAAAGAGGGTCTCTGTATTGGAGATTGGGATTACTATTTTTGATGTTTTTGGAGGGTTCTTTTGCAACTCTTTCTCCTTCTGGAGTAAACTATGAAGGGGAAAAGGAAAAGAAACCAAAAATGAGGAAAAAAGGAGAAGGAGGAGGAATAATTGCCTCGTGTCTATCTATAATAAATGACCCCCCTGTCGTGTTCAATTTGATTGATGCAGTTGTGGCATTAATGGCTATAAAAAGTGATTTGGTTGACCCATACAATGTTCTGGAAAATTGGGATATTACTTCTGTAGATCCTTGTAGTTGGAGGATGGTCACCTGCTCCTCTGATGGCTATGTTTCTGCACTAGGGCTACCCAGCCAGAGCTTGTCAGGTACCTTATCACCTGGGATTGGAAACCTCACTAATTTGCAATCTGTGCTGCTACAGAACAATGTAATTACTGGTCCTATTCCAGCTTCAATTGGGAAATTGGAGAAGCTTCAGACACTTGATCTCTCCAGCAACAGATTCAGTGGTGAAATATCCACTTCTTTAGGGGAACTCAAGAACCTGAATTATTTGCGACTAAACAACAACAGCCTTAGTGGGCCGATTCCTGAATCCTTGTCCGAAGTTGAAGGTCTCACTCTTGTGGACTTGTCCTTCAATAATCTCAGTGGTCCCTTGCCCAAAGTATCGGCAAGAACTTTCAAGCAAGTAATTATAGGCAACTCTTTAATTTGCGGACAGAATTCCGAGAAGAATTGTCCTGTTGTCAATCCAGAGCCCCTTTCCTTCCCACCTGATGGCATTAGAGATCAATCAGAATCTGGGTCGAAAAGCCACCGTGTAGCTATTGCTTTTGGTACAAGCTTTAGTATTGCCTTCTTAATCATACTAGTTATTGTGTCACTTGTTTGGTGGCGATATAGGCACAATCAGCAGATTTTCTTTGATGTTAATGAACAATACGATCCAGAGGTATGCTTGGGGCATTTGAGAAGGTATACCTTTAAGGAACTTCGGAATGCAACTGACCATTTCAACTCAAAGAATATTCTTGGGAGAGGAGGATTTGGAATTGTGTACAAGGGCCTCTTAAATGATGGCACTATTGTAGCCGTCAAGAGATTAAAGGATTTTAATACTTTTGGTGGGGAAATCCAATTTCAGACGGAAGTGGAGTTGATCAGTTTGGCTGTCCATCGGAATCTTCTCCGTCTTTTGGGTTTCTGCTCTACCGAAAACGAACGCCTTCTTGTAAAGAAGCTCCATAAAGATGGAAAGCTGAACCTAATGGTGGATAAAGATTTGAGAAACAGTTTCGACATGGTTGAATTAGCGGAAATGGTTAAAGTTGCTCTTTTATGCACTCAGTTTAATCCTTTGCATCGACCAAAAATGTCAGATGTATTAAGGATGTTGGAAGGTGACGGCTTAGCTGAAAAATGGGAGGCCTCACAAAAGGTGGAAACTTCGAGGAGTCGAGCATTTGAGAATCGTCCTCAAAGATATTCGGATTTCATAGAAGAATCTTCACTCGTAATTGAAGCAATGGAACTTTCAGGGCCGCGGTGA

Network for GWHGAAZE022935

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	73	109	4.20E-11
PF00560.34	LRR_1	161	182	0.35
PF07714.18	PK_Tyr_Ser-Thr	346	446	2.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.760
	SRR3591706	second leaf	10.839
	SRR3591707	mature leaf	3.742
	SRR3591708	Shoot apex	22.057
	SRR3591709	Stem	3.671
	SRR3591710	White floral bud	8.941
	SRR3591711	White flower	4.786
	SRR3591712	Green floral bud	17.247
	SRR3591713	Yellow flower	1.669
SRP173429	SRR8316895	Juvenile bud stage	5.145
	SRR8316896	Juvenile bud stage	7.746
	SRR8316897	Juvenile bud stage	2.687
	SRR8316894	Third green stage	4.777
	SRR8316900	Third green stage	12.710
	SRR8316901	Third green stage	11.260
	SRR8316898	Complete white stage	3.650
	SRR8316899	Complete white stage	15.683
	SRR8316903	Complete white stage	4.521
	SRR8316902	Silver flowering stage	1.206
	SRR8316904	Silver flowering stage	2.382
	SRR8316905	Silver flowering stage	0.953
	SRR8316906	Gold flowering stage	2.632
	SRR8316907	Gold flowering stage	1.610
	SRR8316908	Gold flowering stage	2.197
SRP132670	SRR6706286	Control	5.553
	SRR6706287	Light intensity 50%	5.260
	SRR6706288	Light intensity 20%	6.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.716
	CNS0095593	Slightly white alabastrum(diploid) 2	8.782
	CNS0095594	Slightly white alabastrum(diploid) 3	6.123
	CNS0095595	Whole white alabastrum(diploid) 2	7.642
	CNS0095596	Whole white alabastrum(diploid) 3	6.658
	CNS0095597	Whole white alabastrum(diploid) 4	5.528
	CNS0095598	Silvery flower (diploied) 1	7.204
	CNS0095599	Silvery flower (diploied) 2	7.842
	CNS0095600	Silvery flower (diploied) 3	5.481
	CNS0095601	Golden flower (diploid) 1	6.493
	CNS0095602	Golden flower (diploid) 2	4.550
	CNS0095603	Golden flower (diploid) 3	4.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.093
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.546
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.287
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.493
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.749
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.500
	CNS0095610	Silvery flower (tetraploid) 1	3.615
	CNS0095611	Silvery flower (tetraploid) 2	6.200
	CNS0095612	Silvery flower (tetraploid) 3	6.273
	CNS0095613	Golden flower (tetraploid) 1	0.944
	CNS0095614	Golden flower (tetraploid) 2	1.398
	CNS0095615	Golden flower (tetraploid) 3	0.935
CRA001975	CRR073297	Stem 1	12.526
	CRR073298	Stem 2	13.000
	CRR073299	Stem 3	6.678
	CRR073300	Leaf 1	13.828
	CRR073301	Leaf 2	12.563
	CRR073302	Leaf 3	10.857
	CRR073303	Juvenile bud 1	7.643
	CRR073304	Juvenile bud 2	5.952
	CRR073305	Juvenile bud 3	11.094
	CRR073306	Third green 1	0.956
	CRR073307	Third green 2	0.745
	CRR073308	Third green 3	0.831
	CRR073309	Second white 1	1.133
	CRR073310	Second white 2	1.259
	CRR073311	Second white 3	0.384
	CRR073312	Silver flowering 1	0.545
	CRR073313	Silver flowering 2	0.551
	CRR073314	Silver flowering 3	0.347
	CRR073315	Gold flowering 1	0.360
	CRR073316	Gold flowering 2	1.244
	CRR073317	Gold flowering 3	1.631
	CRR073318	Tawny withering 1	2.089
	CRR073319	Tawny withering 2	2.338
	CRR073320	Tawny withering 3	2.111