Detail information of GWHGAAZE022920


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008811520.12.39302E-77PREDICTED: ADP-ribosylation factor 1-like [Phoenix dactylifera]
COGYP_001737337.12E-24small GTP-binding protein
Swissprottr|P49076|ARF_MAIZE5E-79ADP-ribosylation factor
trEMBLtr|S8CEN5|S8CEN5_9LAMI2E-77Uncharacterized protein {ECO:0000313|EMBL:EPS65320.1} (Fragment)
TAIR10AT5G14670.15E-62ADP-ribosylation factor A1B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8071329280714239-
GWHAAZE00000006mRNA8071329280714239-
GWHAAZE00000006exon8071409280714239-
GWHAAZE00000006exon8071358480713654-
GWHAAZE00000006exon8071329280713429-
GWHAAZE00000006CDS8071409280714239-
GWHAAZE00000006CDS8071358480713654-
GWHAAZE00000006CDS8071329280713429-
Transcript Sequence

Network for GWHGAAZE022920

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00025.22Arf51133.40E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07937ARF1_2 Phospholipase D signaling pathway map04072
Endocytosismap04144

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf613.011
SRR3591706second leaf662.970
SRR3591707mature leaf497.833
SRR3591708Shoot apex494.356
SRR3591709Stem465.616
SRR3591710White floral bud414.522
SRR3591711White flower373.746
SRR3591712Green floral bud458.346
SRR3591713Yellow flower262.922
SRP173429 SRR8316895Juvenile bud stage 248.041
SRR8316896Juvenile bud stage 339.296
SRR8316897Juvenile bud stage 183.106
SRR8316894Third green stage 142.926
SRR8316900Third green stage 382.912
SRR8316901Third green stage 361.298
SRR8316898Complete white stage 181.388
SRR8316899Complete white stage 475.520
SRR8316903Complete white stage 266.777
SRR8316902Silver flowering stage159.604
SRR8316904Silver flowering stage201.592
SRR8316905Silver flowering stage88.480
SRR8316906Gold flowering stage 308.846
SRR8316907Gold flowering stage 317.186
SRR8316908Gold flowering stage 326.311
SRP132670SRR6706286Control439.963
SRR6706287Light intensity 50%488.996
SRR6706288Light intensity 20%535.102
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1255.075
CNS0095593Slightly white alabastrum(diploid) 2267.679
CNS0095594Slightly white alabastrum(diploid) 3223.582
CNS0095595Whole white alabastrum(diploid) 2244.266
CNS0095596Whole white alabastrum(diploid) 3243.782
CNS0095597Whole white alabastrum(diploid) 4209.392
CNS0095598Silvery flower (diploied) 1256.309
CNS0095599Silvery flower (diploied) 2227.786
CNS0095600Silvery flower (diploied) 3276.841
CNS0095601Golden flower (diploid) 1249.628
CNS0095602Golden flower (diploid) 2296.884
CNS0095603Golden flower (diploid) 3294.591
CNS0095604Slightly white alabastrum(tetraploid) 1277.975
CNS0095605Slightly white alabastrum(tetraploid) 2238.876
CNS0095606Slightly white alabastrum(tetraploid) 3411.116
CNS0095607Whole white alabastrum(tetraploid) 1234.637
CNS0095608Whole white alabastrum(tetraploid) 2198.842
CNS0095609Whole white alabastrum(tetraploid) 3317.343
CNS0095610Silvery flower (tetraploid) 1237.639
CNS0095611Silvery flower (tetraploid) 2205.361
CNS0095612Silvery flower (tetraploid) 3273.231
CNS0095613Golden flower (tetraploid) 1183.124
CNS0095614Golden flower (tetraploid) 2243.632
CNS0095615Golden flower (tetraploid) 3241.387
CRA001975CRR073297Stem 1245.046
CRR073298Stem 2245.641
CRR073299Stem 3252.489
CRR073300Leaf 1285.379
CRR073301Leaf 2270.213
CRR073302Leaf 3288.073
CRR073303Juvenile bud 1283.665
CRR073304Juvenile bud 2251.621
CRR073305Juvenile bud 3285.827
CRR073306Third green 1237.271
CRR073307Third green 2270.953
CRR073308Third green 3232.478
CRR073309Second white 1183.779
CRR073310Second white 2159.395
CRR073311Second white 3128.905
CRR073312Silver flowering 1142.909
CRR073313Silver flowering 2158.080
CRR073314Silver flowering 3140.437
CRR073315Gold flowering 1101.381
CRR073316Gold flowering 2114.461
CRR073317Gold flowering 3111.275
CRR073318Tawny withering 1322.363
CRR073319Tawny withering 2288.880
CRR073320Tawny withering 3361.903