Detail information of GWHGAAZE022914


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004238666.11.56606E-73PREDICTED: uncharacterized protein At4g28440 [Solanum lycopersicum]
COGYP_003816198.17E-14single-strand DNA-binding protein
Swissprottr|O49453|Y4844_ARATH2E-53Uncharacterized protein At4g28440
trEMBLtr|M1D248|M1D248_SOLTU1E-73Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400079605}
TAIR10AT1G23750.14E-52Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8061680580618444-
GWHAAZE00000006mRNA8061680580618444-
GWHAAZE00000006exon8061824080618444-
GWHAAZE00000006exon8061680580616995-
GWHAAZE00000006CDS8061824080618444-
GWHAAZE00000006CDS8061680580616995-
Transcript Sequence

Network for GWHGAAZE022914

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf143.750
SRR3591706second leaf68.936
SRR3591707mature leaf23.846
SRR3591708Shoot apex147.060
SRR3591709Stem78.789
SRR3591710White floral bud71.053
SRR3591711White flower101.723
SRR3591712Green floral bud100.952
SRR3591713Yellow flower64.397
SRP173429 SRR8316895Juvenile bud stage 62.496
SRR8316896Juvenile bud stage 88.908
SRR8316897Juvenile bud stage 51.414
SRR8316894Third green stage 40.641
SRR8316900Third green stage 109.175
SRR8316901Third green stage 108.399
SRR8316898Complete white stage 29.122
SRR8316899Complete white stage 86.539
SRR8316903Complete white stage 48.756
SRR8316902Silver flowering stage29.301
SRR8316904Silver flowering stage33.169
SRR8316905Silver flowering stage16.347
SRR8316906Gold flowering stage 51.315
SRR8316907Gold flowering stage 66.325
SRR8316908Gold flowering stage 63.984
SRP132670SRR6706286Control146.061
SRR6706287Light intensity 50%157.171
SRR6706288Light intensity 20%157.288
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1120.630
CNS0095593Slightly white alabastrum(diploid) 2153.059
CNS0095594Slightly white alabastrum(diploid) 3115.831
CNS0095595Whole white alabastrum(diploid) 2104.272
CNS0095596Whole white alabastrum(diploid) 3125.071
CNS0095597Whole white alabastrum(diploid) 477.675
CNS0095598Silvery flower (diploied) 1100.275
CNS0095599Silvery flower (diploied) 291.394
CNS0095600Silvery flower (diploied) 360.192
CNS0095601Golden flower (diploid) 171.427
CNS0095602Golden flower (diploid) 254.740
CNS0095603Golden flower (diploid) 351.795
CNS0095604Slightly white alabastrum(tetraploid) 1117.562
CNS0095605Slightly white alabastrum(tetraploid) 2112.235
CNS0095606Slightly white alabastrum(tetraploid) 3133.650
CNS0095607Whole white alabastrum(tetraploid) 165.184
CNS0095608Whole white alabastrum(tetraploid) 270.962
CNS0095609Whole white alabastrum(tetraploid) 396.781
CNS0095610Silvery flower (tetraploid) 154.158
CNS0095611Silvery flower (tetraploid) 245.644
CNS0095612Silvery flower (tetraploid) 337.716
CNS0095613Golden flower (tetraploid) 137.998
CNS0095614Golden flower (tetraploid) 247.062
CNS0095615Golden flower (tetraploid) 324.063
CRA001975CRR073297Stem 1114.131
CRR073298Stem 2108.986
CRR073299Stem 3128.646
CRR073300Leaf 198.496
CRR073301Leaf 2116.866
CRR073302Leaf 3167.231
CRR073303Juvenile bud 1126.736
CRR073304Juvenile bud 284.825
CRR073305Juvenile bud 384.980
CRR073306Third green 142.885
CRR073307Third green 254.359
CRR073308Third green 347.982
CRR073309Second white 140.948
CRR073310Second white 229.211
CRR073311Second white 322.840
CRR073312Silver flowering 127.989
CRR073313Silver flowering 240.250
CRR073314Silver flowering 325.597
CRR073315Gold flowering 147.310
CRR073316Gold flowering 252.647
CRR073317Gold flowering 338.133
CRR073318Tawny withering 1155.171
CRR073319Tawny withering 2145.516
CRR073320Tawny withering 3159.106