Detail information of GWHGAAZE022910


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010653376.10PREDICTED: RNA-binding protein 25 isoform X1 [Vitis vinifera]
trEMBLtr|F6HPN7|F6HPN7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB56665.1}
TAIR10AT1G60200.16E-67splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8050262280509047-
GWHAAZE00000006mRNA8050262280509047-
GWHAAZE00000006exon8050845780509047-
GWHAAZE00000006exon8050804580508139-
GWHAAZE00000006exon8050739780507412-
GWHAAZE00000006exon8050695880507227-
GWHAAZE00000006exon8050667680506828-
GWHAAZE00000006exon8050524180505676-
GWHAAZE00000006exon8050490780505150-
GWHAAZE00000006exon8050446780504792-
GWHAAZE00000006exon8050354880504140-
GWHAAZE00000006exon8050262280502873-
GWHAAZE00000006CDS8050845780509047-
GWHAAZE00000006CDS8050804580508139-
GWHAAZE00000006CDS8050739780507412-
GWHAAZE00000006CDS8050695880507227-
GWHAAZE00000006CDS8050667680506828-
GWHAAZE00000006CDS8050524180505676-
GWHAAZE00000006CDS8050490780505150-
GWHAAZE00000006CDS8050446780504792-
GWHAAZE00000006CDS8050354880504140-
GWHAAZE00000006CDS8050262280502873-
Transcript Sequence

Network for GWHGAAZE022910

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_13053741.60E-07
PF01480.18PWI9139773.10E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12822RBM25, S164 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0006397biological_processmRNA processing
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.901
SRR3591706second leaf46.083
SRR3591707mature leaf63.588
SRR3591708Shoot apex69.690
SRR3591709Stem85.419
SRR3591710White floral bud65.178
SRR3591711White flower70.600
SRR3591712Green floral bud53.932
SRR3591713Yellow flower58.341
SRP173429 SRR8316895Juvenile bud stage 47.940
SRR8316896Juvenile bud stage 60.150
SRR8316897Juvenile bud stage 34.566
SRR8316894Third green stage 26.699
SRR8316900Third green stage 53.374
SRR8316901Third green stage 57.725
SRR8316898Complete white stage 20.896
SRR8316899Complete white stage 65.515
SRR8316903Complete white stage 54.268
SRR8316902Silver flowering stage26.340
SRR8316904Silver flowering stage44.056
SRR8316905Silver flowering stage21.645
SRR8316906Gold flowering stage 51.114
SRR8316907Gold flowering stage 51.344
SRR8316908Gold flowering stage 51.156
SRP132670SRR6706286Control68.220
SRR6706287Light intensity 50%68.603
SRR6706288Light intensity 20%63.624
CNP0000432CNS0095592Slightly white alabastrum(diploid) 146.593
CNS0095593Slightly white alabastrum(diploid) 244.761
CNS0095594Slightly white alabastrum(diploid) 345.018
CNS0095595Whole white alabastrum(diploid) 236.106
CNS0095596Whole white alabastrum(diploid) 325.360
CNS0095597Whole white alabastrum(diploid) 435.093
CNS0095598Silvery flower (diploied) 169.617
CNS0095599Silvery flower (diploied) 248.340
CNS0095600Silvery flower (diploied) 340.655
CNS0095601Golden flower (diploid) 153.267
CNS0095602Golden flower (diploid) 244.065
CNS0095603Golden flower (diploid) 344.777
CNS0095604Slightly white alabastrum(tetraploid) 150.385
CNS0095605Slightly white alabastrum(tetraploid) 243.410
CNS0095606Slightly white alabastrum(tetraploid) 371.605
CNS0095607Whole white alabastrum(tetraploid) 135.668
CNS0095608Whole white alabastrum(tetraploid) 226.096
CNS0095609Whole white alabastrum(tetraploid) 343.992
CNS0095610Silvery flower (tetraploid) 166.533
CNS0095611Silvery flower (tetraploid) 245.635
CNS0095612Silvery flower (tetraploid) 348.081
CNS0095613Golden flower (tetraploid) 148.068
CNS0095614Golden flower (tetraploid) 254.345
CNS0095615Golden flower (tetraploid) 346.520
CRA001975CRR073297Stem 181.429
CRR073298Stem 270.012
CRR073299Stem 325.309
CRR073300Leaf 177.567
CRR073301Leaf 282.966
CRR073302Leaf 317.293
CRR073303Juvenile bud 120.231
CRR073304Juvenile bud 213.239
CRR073305Juvenile bud 333.049
CRR073306Third green 110.296
CRR073307Third green 27.224
CRR073308Third green 313.181
CRR073309Second white 16.999
CRR073310Second white 211.569
CRR073311Second white 310.573
CRR073312Silver flowering 19.999
CRR073313Silver flowering 215.190
CRR073314Silver flowering 311.669
CRR073315Gold flowering 113.066
CRR073316Gold flowering 223.268
CRR073317Gold flowering 37.591
CRR073318Tawny withering 127.996
CRR073319Tawny withering 239.134
CRR073320Tawny withering 330.626