Detail information of GWHGAAZE022904


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG28977.10U4/U6 small nuclear ribonucleoprotein Prp31 [Gossypium arboreum]
COGYP_008431969.13E-26hypothetical protein N186_02900
Swissprottr|O04658|NOP5A_ARATH7E-26Probable nucleolar protein 5-1
trEMBLtr|A0A061E5S9|A0A061E5S9_THECC0Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1 {ECO:0000313|EMBL:EOY00380.1}
TAIR10AT1G60170.15E-168pre-mRNA processing ribonucleoprotein binding region-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8041614380419456+
GWHAAZE00000006mRNA8041614380419456+
GWHAAZE00000006exon8041614380416292+
GWHAAZE00000006exon8041657780417469+
GWHAAZE00000006exon8041755780417627+
GWHAAZE00000006exon8041793780418039+
GWHAAZE00000006exon8041857180418646+
GWHAAZE00000006exon8041934980419456+
GWHAAZE00000006CDS8041614380416292+
GWHAAZE00000006CDS8041657780417469+
GWHAAZE00000006CDS8041755780417627+
GWHAAZE00000006CDS8041793780418039+
GWHAAZE00000006CDS8041857180418646+
GWHAAZE00000006CDS8041934980419456+
Transcript Sequence

Network for GWHGAAZE022904

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01798.19Nop843123.00E-73
PF09785.10Prp31_C3204377.70E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12844PRPF31 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf59.501
SRR3591706second leaf36.001
SRR3591707mature leaf33.027
SRR3591708Shoot apex50.470
SRR3591709Stem57.509
SRR3591710White floral bud63.330
SRR3591711White flower75.744
SRR3591712Green floral bud60.279
SRR3591713Yellow flower71.184
SRP173429 SRR8316895Juvenile bud stage 44.343
SRR8316896Juvenile bud stage 62.541
SRR8316897Juvenile bud stage 35.318
SRR8316894Third green stage 29.084
SRR8316900Third green stage 81.446
SRR8316901Third green stage 76.558
SRR8316898Complete white stage 34.860
SRR8316899Complete white stage 87.675
SRR8316903Complete white stage 51.577
SRR8316902Silver flowering stage37.724
SRR8316904Silver flowering stage48.984
SRR8316905Silver flowering stage22.416
SRR8316906Gold flowering stage 63.940
SRR8316907Gold flowering stage 63.320
SRR8316908Gold flowering stage 63.992
SRP132670SRR6706286Control73.403
SRR6706287Light intensity 50%72.815
SRR6706288Light intensity 20%82.935
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.834
CNS0095593Slightly white alabastrum(diploid) 256.369
CNS0095594Slightly white alabastrum(diploid) 347.853
CNS0095595Whole white alabastrum(diploid) 255.993
CNS0095596Whole white alabastrum(diploid) 347.489
CNS0095597Whole white alabastrum(diploid) 443.215
CNS0095598Silvery flower (diploied) 154.831
CNS0095599Silvery flower (diploied) 243.833
CNS0095600Silvery flower (diploied) 368.423
CNS0095601Golden flower (diploid) 142.906
CNS0095602Golden flower (diploid) 258.089
CNS0095603Golden flower (diploid) 357.571
CNS0095604Slightly white alabastrum(tetraploid) 166.203
CNS0095605Slightly white alabastrum(tetraploid) 256.715
CNS0095606Slightly white alabastrum(tetraploid) 390.209
CNS0095607Whole white alabastrum(tetraploid) 143.166
CNS0095608Whole white alabastrum(tetraploid) 243.347
CNS0095609Whole white alabastrum(tetraploid) 371.384
CNS0095610Silvery flower (tetraploid) 174.022
CNS0095611Silvery flower (tetraploid) 273.595
CNS0095612Silvery flower (tetraploid) 379.996
CNS0095613Golden flower (tetraploid) 145.284
CNS0095614Golden flower (tetraploid) 265.071
CNS0095615Golden flower (tetraploid) 350.464
CRA001975CRR073297Stem 174.654
CRR073298Stem 266.072
CRR073299Stem 369.131
CRR073300Leaf 176.027
CRR073301Leaf 286.462
CRR073302Leaf 383.923
CRR073303Juvenile bud 190.123
CRR073304Juvenile bud 260.191
CRR073305Juvenile bud 394.696
CRR073306Third green 153.983
CRR073307Third green 252.234
CRR073308Third green 351.031
CRR073309Second white 155.961
CRR073310Second white 251.202
CRR073311Second white 345.497
CRR073312Silver flowering 140.558
CRR073313Silver flowering 237.075
CRR073314Silver flowering 336.194
CRR073315Gold flowering 148.485
CRR073316Gold flowering 264.234
CRR073317Gold flowering 338.699
CRR073318Tawny withering 155.797
CRR073319Tawny withering 249.417
CRR073320Tawny withering 353.822