Detail information of GWHGAAZE022890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266222.10PREDICTED: serine/threonine-protein kinase PBS1 [Vitis vinifera]
COGYP_001958461.17E-24hypothetical protein Aasi_1443
Swissprottr|Q9LQQ8|RLCK7_ARATH1E-79Probable serine/threonine-protein kinase RLCKVII
trEMBLtr|D7TNN0|D7TNN0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32103.3}
TAIR10AT1G24030.28E-161Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8018455380186728-
GWHAAZE00000006mRNA8018455380186728-
GWHAAZE00000006exon8018455380184789-
GWHAAZE00000006exon8018491480185023-
GWHAAZE00000006exon8018529880185442-
GWHAAZE00000006exon8018553680185699-
GWHAAZE00000006exon8018602080186218-
GWHAAZE00000006exon8018636880186552-
GWHAAZE00000006exon8018665980186728-
GWHAAZE00000006CDS8018665980186728-
GWHAAZE00000006CDS8018636880186552-
GWHAAZE00000006CDS8018602080186218-
GWHAAZE00000006CDS8018553680185699-
GWHAAZE00000006CDS8018529880185442-
GWHAAZE00000006CDS8018491480185023-
GWHAAZE00000006CDS8018455380184789-
Transcript Sequence

Network for GWHGAAZE022890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase633463.80E-43
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VIIb

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.113
SRR3591706second leaf6.827
SRR3591707mature leaf1.477
SRR3591708Shoot apex8.122
SRR3591709Stem115.033
SRR3591710White floral bud1.215
SRR3591711White flower0.329
SRR3591712Green floral bud3.067
SRR3591713Yellow flower0.036
SRP173429 SRR8316895Juvenile bud stage 19.523
SRR8316896Juvenile bud stage 9.335
SRR8316897Juvenile bud stage 3.097
SRR8316894Third green stage 2.068
SRR8316900Third green stage 4.508
SRR8316901Third green stage 4.624
SRR8316898Complete white stage 0.441
SRR8316899Complete white stage 3.918
SRR8316903Complete white stage 0.367
SRR8316902Silver flowering stage0.132
SRR8316904Silver flowering stage0.175
SRR8316905Silver flowering stage0.122
SRR8316906Gold flowering stage 0.060
SRR8316907Gold flowering stage 0.067
SRR8316908Gold flowering stage 0.179
SRP132670SRR6706286Control3.563
SRR6706287Light intensity 50%3.338
SRR6706288Light intensity 20%4.905
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.305
CNS0095593Slightly white alabastrum(diploid) 23.552
CNS0095594Slightly white alabastrum(diploid) 35.771
CNS0095595Whole white alabastrum(diploid) 22.009
CNS0095596Whole white alabastrum(diploid) 32.514
CNS0095597Whole white alabastrum(diploid) 41.362
CNS0095598Silvery flower (diploied) 12.352
CNS0095599Silvery flower (diploied) 20.939
CNS0095600Silvery flower (diploied) 30.656
CNS0095601Golden flower (diploid) 12.910
CNS0095602Golden flower (diploid) 20.354
CNS0095603Golden flower (diploid) 30.327
CNS0095604Slightly white alabastrum(tetraploid) 12.562
CNS0095605Slightly white alabastrum(tetraploid) 22.570
CNS0095606Slightly white alabastrum(tetraploid) 310.185
CNS0095607Whole white alabastrum(tetraploid) 10.783
CNS0095608Whole white alabastrum(tetraploid) 20.453
CNS0095609Whole white alabastrum(tetraploid) 33.856
CNS0095610Silvery flower (tetraploid) 10.283
CNS0095611Silvery flower (tetraploid) 20.763
CNS0095612Silvery flower (tetraploid) 30.395
CNS0095613Golden flower (tetraploid) 10.070
CNS0095614Golden flower (tetraploid) 20.287
CNS0095615Golden flower (tetraploid) 30.045
CRA001975CRR073297Stem 130.259
CRR073298Stem 210.709
CRR073299Stem 315.005
CRR073300Leaf 12.214
CRR073301Leaf 22.342
CRR073302Leaf 33.695
CRR073303Juvenile bud 11.257
CRR073304Juvenile bud 20.571
CRR073305Juvenile bud 32.805
CRR073306Third green 10.265
CRR073307Third green 20.420
CRR073308Third green 30.464
CRR073309Second white 10.053
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.043
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 13.934
CRR073316Gold flowering 21.884
CRR073317Gold flowering 32.187
CRR073318Tawny withering 17.915
CRR073319Tawny withering 27.393
CRR073320Tawny withering 315.779