Gene detail

Detail information of GWHGAAZE022868

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFJ15126.1	0	pyruvate dehydrogenase complex E1 alpha subunit dehydrogenase [Camellia sinensis]
COG	YP_007698747.1	2E-114	pyruvate dehydrogenase E1 component subunit alpha
Swissprot	tr\|P52903\|ODPA_SOLTU	0	Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial (Precursor)
trEMBL	tr\|I1Z766\|I1Z766_CAMSI	0	Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256\|RuleBase:RU361139}
TAIR10	AT1G59900.1	1E-179	pyruvate dehydrogenase complex E1 alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79881118	79887099	+
GWHAAZE00000006	mRNA	79881118	79887099	+
GWHAAZE00000006	exon	79881118	79881210	+
GWHAAZE00000006	exon	79881403	79882195	+
GWHAAZE00000006	exon	79882304	79882383	+
GWHAAZE00000006	exon	79884409	79884486	+
GWHAAZE00000006	exon	79885050	79885145	+
GWHAAZE00000006	exon	79885266	79885337	+
GWHAAZE00000006	exon	79885471	79885524	+
GWHAAZE00000006	exon	79885647	79885712	+
GWHAAZE00000006	exon	79886614	79887099	+
GWHAAZE00000006	CDS	79881118	79881210	+
GWHAAZE00000006	CDS	79881403	79882195	+
GWHAAZE00000006	CDS	79882304	79882383	+
GWHAAZE00000006	CDS	79884409	79884486	+
GWHAAZE00000006	CDS	79885050	79885145	+
GWHAAZE00000006	CDS	79885266	79885337	+
GWHAAZE00000006	CDS	79885471	79885524	+
GWHAAZE00000006	CDS	79885647	79885712	+
GWHAAZE00000006	CDS	79886614	79886658	+
GWHAAZE00000006	three_prime_UTR	79886659	79887099	+

Transcript Sequence
>GWHTAAZE022898 ATGGTGGTCGAGCTCCGGTGCCGGAGAGGAGGTGATGGTGGTCGCCGAAGAGAAGCCGGGGGTGGTCAGAGGCAGCTGACAGTAGTGATGGTGATCAAACCCACTTTGTCGCGCACGGATCTCCTCACCTCACCTCACCTCACAGAAACTCGGATTGTTCCACCAACCAACCAACCAACGAGACGAGAGATGGCTTTGAACAACCGGACTTCCAATCTCCTCAAACCCCTCGCCACGTACATTCCATCCCTCCGCCGCCCACTCTCCTCTTCCTCGTCATTTTCCGATGACAAAACTACCATCACCGTGGAGACAAGCGTCCCCTTCACCGGCCACAAGTGCGATCCGCCCCCTCGCACCATCGACACCACTCCCAAGGAGCTCATGACCTTCTTCCGTGATATGGCACAGATGCGCCGCATGGAGATCGCCGCTGACTCTCTCTACAAATCCAAGCTCATCCGTGGTTTCTGCCACCTGTACGACGGCCAGGAAGCCGTCGCCGTTGGAATGGAAGCCGCAATCACCAAAAAGGATTGTATAATCACCGCTTATAGAGATCACTGTATTTTCCTTGGCCGAGGGGGGACTCTATTAGAGGCATTTTCGGAGCTCATGGGGCGTAGGGATGGGTGTTCCAAGGGAAAAGGAGGATCGATGCACTTTTATAAGAAGGAAGCTGGATTTTATGGTGGACATGGAATTGTTGGGGCTCAGGTTCCGTTAGGGTGTGGATTGGCTTTTGCGCAGAAGTATTCAAAGGAACAACATGTTTCGTTTGCGTTGTATGGAGATGGAGCGGCTAATCAAGGCCAACTGTTTGAGGCACTTAATATGGCTGCTCTTTGGGACTTGCCTGCTATTTTTGTTTGCGAGAACAATCACTATGGTATGGGTACTGCGGAGTGGAGAGCGGCTAAGAGTCCGGCATATTACAAGCGAGGGGATTACGTTCCTGGTTTAAAGGTAGATGGCATGGATGCATTTGCGGTAAAACAAGCTTGCAAGTTTGCCAAGGAGCATGCACTGAAGAATGGGCCCATCATTCTTGAAATGGACACTTACAGGTACCATGGTCACTCAATGTCTGATCCTGGGAGCACCTACCGCACGCGTGATGAGATTAGTGGTGTTAGACAGGAGCGTGATCCAATTGAAAGAATAAGAAAGCTTATATTAGCTCATGAGCTAGCCACCGAGAAAGAGCTGAAGGAAATAGAGAAGGAACTAAGAAAAGAGGTTGATGAAGCGATTGCTCAAGCCAAGGAAAGCCCAGTGCCTGATCCCTCTGAACTCTTCACCAATGTATACGTCAAAGGATTTGGAGTCGAGGCTTGTGGAGCAGATAGGAAAGAAGTCAGAGCTGTGCTTCCTTGAGACAAAACACATTGGGCTTTAAACCTTCCCTCTTCTTTCGCTCACAATAAAAAGCATGGAGATTATTGAACAATAACCTTTGCAACAAAAAATTGTCATTGATTCCGTTTGCTCAACTCCGTTTTGGTTGTCTGATAATAATTTTTTGTGTAGGAAATCATTTTATTTTCCTCAATCGCTATAATTTTTTGTGTAGGAAATCATTGATTCCGTTTGCCATGACCAACATGTCTCGATGAAAAGAATATGTAAAGTAGAATGTTTTTCCCATATCGGAGTTAATCTTGTTATTGTTGTGTTTGTGTTGAATGCCACAAAAAATCCAAATTGTTTGTTGGGATACTAGGTCCGTTTGGGCTTGTGGGTTCTTAACATGACCACATTTGGTTCGAGGGGAAATAGAAGGAAAATTTATTGCCTTAATATATCATTCCGTCCTTA

Network for GWHGAAZE022868

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00676.21	E1_dh	134	429	2.50E-119

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00161	PDHA, pdhA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		HIF-1 signaling pathway	map04066
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006086	biological_process	acetyl-CoA biosynthetic process from pyruvate
GO:0043231	cellular_component	intracellular membrane-bounded organelle
GO:0004739	molecular_function	pyruvate dehydrogenase (acetyl-transferring) activity
GO:0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	102.326
	SRR3591706	second leaf	58.559
	SRR3591707	mature leaf	32.371
	SRR3591708	Shoot apex	78.619
	SRR3591709	Stem	78.058
	SRR3591710	White floral bud	98.881
	SRR3591711	White flower	89.857
	SRR3591712	Green floral bud	129.059
	SRR3591713	Yellow flower	90.970
SRP173429	SRR8316895	Juvenile bud stage	62.802
	SRR8316896	Juvenile bud stage	100.639
	SRR8316897	Juvenile bud stage	40.801
	SRR8316894	Third green stage	44.557
	SRR8316900	Third green stage	161.851
	SRR8316901	Third green stage	158.790
	SRR8316898	Complete white stage	56.969
	SRR8316899	Complete white stage	123.959
	SRR8316903	Complete white stage	90.632
	SRR8316902	Silver flowering stage	65.190
	SRR8316904	Silver flowering stage	74.568
	SRR8316905	Silver flowering stage	46.808
	SRR8316906	Gold flowering stage	146.579
	SRR8316907	Gold flowering stage	143.283
	SRR8316908	Gold flowering stage	144.015
SRP132670	SRR6706286	Control	154.144
	SRR6706287	Light intensity 50%	155.743
	SRR6706288	Light intensity 20%	162.612
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	89.834
	CNS0095593	Slightly white alabastrum(diploid) 2	82.547
	CNS0095594	Slightly white alabastrum(diploid) 3	87.535
	CNS0095595	Whole white alabastrum(diploid) 2	85.340
	CNS0095596	Whole white alabastrum(diploid) 3	108.925
	CNS0095597	Whole white alabastrum(diploid) 4	83.939
	CNS0095598	Silvery flower (diploied) 1	41.099
	CNS0095599	Silvery flower (diploied) 2	46.840
	CNS0095600	Silvery flower (diploied) 3	89.381
	CNS0095601	Golden flower (diploid) 1	46.221
	CNS0095602	Golden flower (diploid) 2	69.767
	CNS0095603	Golden flower (diploid) 3	70.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	81.177
	CNS0095605	Slightly white alabastrum(tetraploid) 2	67.477
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.240
	CNS0095607	Whole white alabastrum(tetraploid) 1	69.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	72.302
	CNS0095609	Whole white alabastrum(tetraploid) 3	104.443
	CNS0095610	Silvery flower (tetraploid) 1	83.052
	CNS0095611	Silvery flower (tetraploid) 2	70.255
	CNS0095612	Silvery flower (tetraploid) 3	65.851
	CNS0095613	Golden flower (tetraploid) 1	59.836
	CNS0095614	Golden flower (tetraploid) 2	82.470
	CNS0095615	Golden flower (tetraploid) 3	66.485
CRA001975	CRR073297	Stem 1	77.958
	CRR073298	Stem 2	72.502
	CRR073299	Stem 3	75.652
	CRR073300	Leaf 1	98.845
	CRR073301	Leaf 2	98.441
	CRR073302	Leaf 3	93.817
	CRR073303	Juvenile bud 1	97.557
	CRR073304	Juvenile bud 2	98.510
	CRR073305	Juvenile bud 3	88.128
	CRR073306	Third green 1	103.606
	CRR073307	Third green 2	71.161
	CRR073308	Third green 3	79.371
	CRR073309	Second white 1	82.582
	CRR073310	Second white 2	70.573
	CRR073311	Second white 3	59.930
	CRR073312	Silver flowering 1	65.606
	CRR073313	Silver flowering 2	71.426
	CRR073314	Silver flowering 3	67.414
	CRR073315	Gold flowering 1	23.017
	CRR073316	Gold flowering 2	37.650
	CRR073317	Gold flowering 3	18.236
	CRR073318	Tawny withering 1	49.816
	CRR073319	Tawny withering 2	42.507
	CRR073320	Tawny withering 3	52.024